7 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100183259	Uncharacterized protein. (721 aa)
	LOC100187346	Uncharacterized protein. (580 aa)
	F6ZL99_CIOIN	Utp12 domain-containing protein. (238 aa)
	LOC100186454	Uncharacterized protein. (907 aa)
	H2XM74_CIOIN	Uncharacterized protein. (234 aa)
	H2XTN0_CIOIN	Uncharacterized protein. (370 aa)
	LOC100184042	Uncharacterized protein. (611 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6ZL99_CIOIN	H2XTN0_CIOIN	ENSCINP00000010469	ENSCINP00000033014	Utp12 domain-containing protein.	Uncharacterized protein.	0.989
F6ZL99_CIOIN	LOC100183259	ENSCINP00000010469	ENSCINP00000000681	Utp12 domain-containing protein.	Uncharacterized protein.	0.986
F6ZL99_CIOIN	LOC100184042	ENSCINP00000010469	ENSCINP00000035636	Utp12 domain-containing protein.	Uncharacterized protein.	0.986
F6ZL99_CIOIN	LOC100186454	ENSCINP00000010469	ENSCINP00000011758	Utp12 domain-containing protein.	Uncharacterized protein.	0.988
F6ZL99_CIOIN	LOC100187346	ENSCINP00000010469	ENSCINP00000010464	Utp12 domain-containing protein.	Uncharacterized protein.	0.920
H2XTN0_CIOIN	F6ZL99_CIOIN	ENSCINP00000033014	ENSCINP00000010469	Uncharacterized protein.	Utp12 domain-containing protein.	0.989
H2XTN0_CIOIN	LOC100183259	ENSCINP00000033014	ENSCINP00000000681	Uncharacterized protein.	Uncharacterized protein.	0.999
H2XTN0_CIOIN	LOC100184042	ENSCINP00000033014	ENSCINP00000035636	Uncharacterized protein.	Uncharacterized protein.	0.999
H2XTN0_CIOIN	LOC100186454	ENSCINP00000033014	ENSCINP00000011758	Uncharacterized protein.	Uncharacterized protein.	0.999
H2XTN0_CIOIN	LOC100187346	ENSCINP00000033014	ENSCINP00000010464	Uncharacterized protein.	Uncharacterized protein.	0.995
LOC100183259	F6ZL99_CIOIN	ENSCINP00000000681	ENSCINP00000010469	Uncharacterized protein.	Utp12 domain-containing protein.	0.986
LOC100183259	H2XTN0_CIOIN	ENSCINP00000000681	ENSCINP00000033014	Uncharacterized protein.	Uncharacterized protein.	0.999
LOC100183259	LOC100184042	ENSCINP00000000681	ENSCINP00000035636	Uncharacterized protein.	Uncharacterized protein.	0.999
LOC100183259	LOC100186454	ENSCINP00000000681	ENSCINP00000011758	Uncharacterized protein.	Uncharacterized protein.	0.999
LOC100183259	LOC100187346	ENSCINP00000000681	ENSCINP00000010464	Uncharacterized protein.	Uncharacterized protein.	0.993
LOC100184042	F6ZL99_CIOIN	ENSCINP00000035636	ENSCINP00000010469	Uncharacterized protein.	Utp12 domain-containing protein.	0.986
LOC100184042	H2XTN0_CIOIN	ENSCINP00000035636	ENSCINP00000033014	Uncharacterized protein.	Uncharacterized protein.	0.999
LOC100184042	LOC100183259	ENSCINP00000035636	ENSCINP00000000681	Uncharacterized protein.	Uncharacterized protein.	0.999
LOC100184042	LOC100186454	ENSCINP00000035636	ENSCINP00000011758	Uncharacterized protein.	Uncharacterized protein.	0.999
LOC100184042	LOC100187346	ENSCINP00000035636	ENSCINP00000010464	Uncharacterized protein.	Uncharacterized protein.	0.993