(6 nodes) 3-5 RNA helicase activity network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6U3S7_CIOIN	OB_NTP_bind domain-containing protein. (348 aa)
	F6X3C5_CIOIN	HA2 domain-containing protein. (413 aa)
	F6Z672_CIOIN	Uncharacterized protein. (648 aa)
	F6X3A4_CIOIN	Uncharacterized protein. (594 aa)
	F6RIW3_CIOIN	Uncharacterized protein. (453 aa)
	F6ZP18_CIOIN	Uncharacterized protein. (1328 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6RIW3_CIOIN	F6U3S7_CIOIN	ENSCINP00000025449	ENSCINP00000011574	Uncharacterized protein.	OB_NTP_bind domain-containing protein.	0.909
F6RIW3_CIOIN	F6X3A4_CIOIN	ENSCINP00000025449	ENSCINP00000015974	Uncharacterized protein.	Uncharacterized protein.	0.665
F6RIW3_CIOIN	F6X3C5_CIOIN	ENSCINP00000025449	ENSCINP00000015971	Uncharacterized protein.	HA2 domain-containing protein.	0.871
F6U3S7_CIOIN	F6RIW3_CIOIN	ENSCINP00000011574	ENSCINP00000025449	OB_NTP_bind domain-containing protein.	Uncharacterized protein.	0.909
F6U3S7_CIOIN	F6X3A4_CIOIN	ENSCINP00000011574	ENSCINP00000015974	OB_NTP_bind domain-containing protein.	Uncharacterized protein.	0.621
F6U3S7_CIOIN	F6X3C5_CIOIN	ENSCINP00000011574	ENSCINP00000015971	OB_NTP_bind domain-containing protein.	HA2 domain-containing protein.	0.616
F6X3A4_CIOIN	F6RIW3_CIOIN	ENSCINP00000015974	ENSCINP00000025449	Uncharacterized protein.	Uncharacterized protein.	0.665
F6X3A4_CIOIN	F6U3S7_CIOIN	ENSCINP00000015974	ENSCINP00000011574	Uncharacterized protein.	OB_NTP_bind domain-containing protein.	0.621
F6X3A4_CIOIN	F6X3C5_CIOIN	ENSCINP00000015974	ENSCINP00000015971	Uncharacterized protein.	HA2 domain-containing protein.	0.944
F6X3C5_CIOIN	F6RIW3_CIOIN	ENSCINP00000015971	ENSCINP00000025449	HA2 domain-containing protein.	Uncharacterized protein.	0.871
F6X3C5_CIOIN	F6U3S7_CIOIN	ENSCINP00000015971	ENSCINP00000011574	HA2 domain-containing protein.	OB_NTP_bind domain-containing protein.	0.616
F6X3C5_CIOIN	F6X3A4_CIOIN	ENSCINP00000015971	ENSCINP00000015974	HA2 domain-containing protein.	Uncharacterized protein.	0.944