(29 nodes) Protein localization to chromosome network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2XZD3_CIOIN	Uncharacterized protein. (221 aa)
	F6UD77_CIOIN	ANK_REP_REGION domain-containing protein. (538 aa)
	F6ZYR4_CIOIN	Nipped-B protein. (723 aa)
	F6PL57_CIOIN	Uncharacterized protein. (1087 aa)
	F6TV58_CIOIN	Uncharacterized protein. (147 aa)
	LOC100180409	Meiotic recombination protein SPO11. (385 aa)
	LOC100177411	RuvB-like helicase; Belongs to the RuvB family. (467 aa)
	LOC100176899	Protein kinase domain-containing protein. (658 aa)
	LOC100176196	Protein RCC2 homolog. (475 aa)
	F6SED5_CIOIN	Uncharacterized protein. (211 aa)
	F6UCG0_CIOIN	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR). (943 aa)
	LOC100183428	Uncharacterized protein. (786 aa)
	LOC100186469	WD_REPEATS_REGION domain-containing protein. (338 aa)
	F6ZU29_CIOIN	Uncharacterized protein. (188 aa)
	LOC100182525	Uncharacterized protein. (461 aa)
	F6VBZ6_CIOIN	Telo_bind domain-containing protein. (527 aa)
	LOC100178070	Uncharacterized protein. (347 aa)
	H2XJH5_CIOIN	ANK_REP_REGION domain-containing protein. (95 aa)
	H2XJT4_CIOIN	PHD-type domain-containing protein. (508 aa)
	H2XK76_CIOIN	Poly [ADP-ribose] polymerase. (375 aa)
	H2XN24_CIOIN	PI3K/PI4K domain-containing protein; Belongs to the PI3/PI4-kinase family. (158 aa)
	H2XNP0_CIOIN	Uncharacterized protein. (243 aa)
	H2XR26_CIOIN	Uncharacterized protein. (102 aa)
	H2XSQ9_CIOIN	MTBP_C domain-containing protein. (144 aa)
	H2XVQ7_CIOIN	WAPL domain-containing protein. (196 aa)
	LOC100184449	PIN2/TERF1-interacting telomerase inhibitor 1-like. (260 aa)
	H2XW41_CIOIN	Uncharacterized protein. (649 aa)
	H2XWV3_CIOIN	Rod_C domain-containing protein. (792 aa)
	LOC100182514	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (607 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6SED5_CIOIN	H2XVQ7_CIOIN	ENSCINP00000012713	ENSCINP00000033741	Uncharacterized protein.	WAPL domain-containing protein.	0.407
F6TV58_CIOIN	F6UCG0_CIOIN	ENSCINP00000008579	ENSCINP00000012971	Uncharacterized protein.	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.480
F6TV58_CIOIN	H2XJH5_CIOIN	ENSCINP00000008579	ENSCINP00000029807	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.774
F6TV58_CIOIN	H2XN24_CIOIN	ENSCINP00000008579	ENSCINP00000031057	Uncharacterized protein.	PI3K/PI4K domain-containing protein; Belongs to the PI3/PI4-kinase family.	0.938
F6TV58_CIOIN	H2XNP0_CIOIN	ENSCINP00000008579	ENSCINP00000031273	Uncharacterized protein.	Uncharacterized protein.	0.774
F6TV58_CIOIN	LOC100182514	ENSCINP00000008579	ENSCINP00000034174	Uncharacterized protein.	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.	0.769
F6UCG0_CIOIN	F6TV58_CIOIN	ENSCINP00000012971	ENSCINP00000008579	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	Uncharacterized protein.	0.480
F6UCG0_CIOIN	H2XN24_CIOIN	ENSCINP00000012971	ENSCINP00000031057	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	PI3K/PI4K domain-containing protein; Belongs to the PI3/PI4-kinase family.	0.480
F6UCG0_CIOIN	LOC100180409	ENSCINP00000012971	ENSCINP00000009041	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	Meiotic recombination protein SPO11.	0.656
F6UCG0_CIOIN	LOC100182514	ENSCINP00000012971	ENSCINP00000034174	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.	0.799
F6UD77_CIOIN	H2XK76_CIOIN	ENSCINP00000005547	ENSCINP00000030058	ANK_REP_REGION domain-containing protein.	Poly [ADP-ribose] polymerase.	0.920
F6VBZ6_CIOIN	LOC100182514	ENSCINP00000027127	ENSCINP00000034174	Telo_bind domain-containing protein.	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.	0.503
F6ZYR4_CIOIN	H2XR26_CIOIN	ENSCINP00000005688	ENSCINP00000032110	Nipped-B protein.	Uncharacterized protein.	0.406
F6ZYR4_CIOIN	H2XVQ7_CIOIN	ENSCINP00000005688	ENSCINP00000033741	Nipped-B protein.	WAPL domain-containing protein.	0.717
F6ZYR4_CIOIN	H2XZD3_CIOIN	ENSCINP00000005688	ENSCINP00000035017	Nipped-B protein.	Uncharacterized protein.	0.968
H2XJH5_CIOIN	F6TV58_CIOIN	ENSCINP00000029807	ENSCINP00000008579	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.774
H2XJH5_CIOIN	H2XN24_CIOIN	ENSCINP00000029807	ENSCINP00000031057	ANK_REP_REGION domain-containing protein.	PI3K/PI4K domain-containing protein; Belongs to the PI3/PI4-kinase family.	0.774
H2XJH5_CIOIN	H2XNP0_CIOIN	ENSCINP00000029807	ENSCINP00000031273	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.446
H2XJH5_CIOIN	LOC100182514	ENSCINP00000029807	ENSCINP00000034174	ANK_REP_REGION domain-containing protein.	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.	0.947
H2XK76_CIOIN	F6UD77_CIOIN	ENSCINP00000030058	ENSCINP00000005547	Poly [ADP-ribose] polymerase.	ANK_REP_REGION domain-containing protein.	0.920