10 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2Y3C6_CIOIN	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (540 aa)
	F6YBA5_CIOIN	Uncharacterized protein. (1170 aa)
	F6QDE3_CIOIN	Bms1-type G domain-containing protein. (1061 aa)
	zf(c2h2)-102	ATP-dependent DNA helicase II subunit 2; Single-stranded DNA-dependent ATP-dependent helicase. (706 aa)
	LOC100180728	WD_REPEATS_REGION domain-containing protein. (453 aa)
	F6WWW4_CIOIN	WD_REPEATS_REGION domain-containing protein. (786 aa)
	F7A9P4_CIOIN	NUC194 domain-containing protein. (726 aa)
	LOC100181824	Bms1-type G domain-containing protein. (784 aa)
	LOC100182620	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
	H2Y3M4_CIOIN	Uncharacterized protein. (185 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6QDE3_CIOIN	F6WWW4_CIOIN	ENSCINP00000006493	ENSCINP00000019387	Bms1-type G domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
F6QDE3_CIOIN	F6YBA5_CIOIN	ENSCINP00000006493	ENSCINP00000002188	Bms1-type G domain-containing protein.	Uncharacterized protein.	0.757
F6QDE3_CIOIN	LOC100180728	ENSCINP00000006493	ENSCINP00000010082	Bms1-type G domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.994
F6QDE3_CIOIN	LOC100181824	ENSCINP00000006493	ENSCINP00000036023	Bms1-type G domain-containing protein.	Bms1-type G domain-containing protein.	0.952
F6QDE3_CIOIN	LOC100182620	ENSCINP00000006493	ENSCINP00000036504	Bms1-type G domain-containing protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.987
F6WWW4_CIOIN	F6QDE3_CIOIN	ENSCINP00000019387	ENSCINP00000006493	WD_REPEATS_REGION domain-containing protein.	Bms1-type G domain-containing protein.	0.999
F6WWW4_CIOIN	F6YBA5_CIOIN	ENSCINP00000019387	ENSCINP00000002188	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.635
F6WWW4_CIOIN	LOC100180728	ENSCINP00000019387	ENSCINP00000010082	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.998
F6WWW4_CIOIN	LOC100181824	ENSCINP00000019387	ENSCINP00000036023	WD_REPEATS_REGION domain-containing protein.	Bms1-type G domain-containing protein.	0.778
F6WWW4_CIOIN	LOC100182620	ENSCINP00000019387	ENSCINP00000036504	WD_REPEATS_REGION domain-containing protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.967
F6YBA5_CIOIN	F6QDE3_CIOIN	ENSCINP00000002188	ENSCINP00000006493	Uncharacterized protein.	Bms1-type G domain-containing protein.	0.757
F6YBA5_CIOIN	F6WWW4_CIOIN	ENSCINP00000002188	ENSCINP00000019387	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.635
F6YBA5_CIOIN	LOC100180728	ENSCINP00000002188	ENSCINP00000010082	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.645
F6YBA5_CIOIN	LOC100182620	ENSCINP00000002188	ENSCINP00000036504	Uncharacterized protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.512
F7A9P4_CIOIN	H2Y3C6_CIOIN	ENSCINP00000023638	ENSCINP00000036411	NUC194 domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.945
F7A9P4_CIOIN	H2Y3M4_CIOIN	ENSCINP00000023638	ENSCINP00000036509	NUC194 domain-containing protein.	Uncharacterized protein.	0.900
F7A9P4_CIOIN	zf(c2h2)-102	ENSCINP00000023638	ENSCINP00000009339	NUC194 domain-containing protein.	ATP-dependent DNA helicase II subunit 2; Single-stranded DNA-dependent ATP-dependent helicase.	0.920
H2Y3C6_CIOIN	F7A9P4_CIOIN	ENSCINP00000036411	ENSCINP00000023638	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	NUC194 domain-containing protein.	0.945
H2Y3C6_CIOIN	zf(c2h2)-102	ENSCINP00000036411	ENSCINP00000009339	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	ATP-dependent DNA helicase II subunit 2; Single-stranded DNA-dependent ATP-dependent helicase.	0.920
H2Y3M4_CIOIN	F7A9P4_CIOIN	ENSCINP00000036509	ENSCINP00000023638	Uncharacterized protein.	NUC194 domain-containing protein.	0.900