(18 nodes) Monoubiquitinated protein deubiquitination network (Ciona intestinalis)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Known Interactions

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Predicted Interactions

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Your Input:
	F6SEM6_CIOIN	SAGA-associated factor 11 homolog; Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. (256 aa)
	F6RL41_CIOIN	FAT domain-containing protein. (2944 aa)
	LOC100178056	Splicing factor 3B subunit 3 isoform X1. (1216 aa)
	LOC100177564	Uncharacterized protein. (181 aa)
	LOC100181502	TFIID_20kDa domain-containing protein. (187 aa)
	F6YGZ1_CIOIN	Uncharacterized protein. (587 aa)
	F6YGJ7_CIOIN	Uncharacterized protein; Belongs to the peptidase C19 family. (1099 aa)
	F6QNK0_CIOIN	TAF domain-containing protein. (263 aa)
	F7AWC6_CIOIN	WD_REPEATS_REGION domain-containing protein. (272 aa)
	LOC100180594	Transcriptional adapter 1-like. (307 aa)
	F6RG39_CIOIN	SGF29 C-terminal domain-containing protein. (293 aa)
	F7B826_CIOIN	Uncharacterized protein. (316 aa)
	H2XR85_CIOIN	USP domain-containing protein; Belongs to the peptidase C19 family. (1053 aa)
	H2XW76_CIOIN	TAF domain-containing protein. (526 aa)
	LOC100177765	UCH_1 domain-containing protein. (237 aa)
	H2XYD4_CIOIN	Uncharacterized protein. (216 aa)
	H2Y0L0_CIOIN	FAT domain-containing protein. (303 aa)
	H2Y2Q0_CIOIN	FATC domain-containing protein; Belongs to the PI3/PI4-kinase family. (450 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6QNK0_CIOIN	F6RG39_CIOIN	ENSCINP00000009720	ENSCINP00000023962	TAF domain-containing protein.	SGF29 C-terminal domain-containing protein.	0.827
F6QNK0_CIOIN	F6RL41_CIOIN	ENSCINP00000009720	ENSCINP00000001174	TAF domain-containing protein.	FAT domain-containing protein.	0.698
F6QNK0_CIOIN	F6SEM6_CIOIN	ENSCINP00000009720	ENSCINP00000000728	TAF domain-containing protein.	SAGA-associated factor 11 homolog; Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription.	0.875
F6QNK0_CIOIN	F6YGZ1_CIOIN	ENSCINP00000009720	ENSCINP00000008460	TAF domain-containing protein.	Uncharacterized protein.	0.852
F6QNK0_CIOIN	F7AWC6_CIOIN	ENSCINP00000009720	ENSCINP00000011057	TAF domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.852
F6QNK0_CIOIN	F7B826_CIOIN	ENSCINP00000009720	ENSCINP00000027223	TAF domain-containing protein.	Uncharacterized protein.	0.903
F6QNK0_CIOIN	H2XW76_CIOIN	ENSCINP00000009720	ENSCINP00000033910	TAF domain-containing protein.	TAF domain-containing protein.	0.904
F6QNK0_CIOIN	H2Y0L0_CIOIN	ENSCINP00000009720	ENSCINP00000035444	TAF domain-containing protein.	FAT domain-containing protein.	0.798
F6QNK0_CIOIN	H2Y2Q0_CIOIN	ENSCINP00000009720	ENSCINP00000036185	TAF domain-containing protein.	FATC domain-containing protein; Belongs to the PI3/PI4-kinase family.	0.798
F6QNK0_CIOIN	LOC100177564	ENSCINP00000009720	ENSCINP00000003589	TAF domain-containing protein.	Uncharacterized protein.	0.950
F6QNK0_CIOIN	LOC100178056	ENSCINP00000009720	ENSCINP00000002626	TAF domain-containing protein.	Splicing factor 3B subunit 3 isoform X1.	0.805
F6QNK0_CIOIN	LOC100180594	ENSCINP00000009720	ENSCINP00000018429	TAF domain-containing protein.	Transcriptional adapter 1-like.	0.863
F6QNK0_CIOIN	LOC100181502	ENSCINP00000009720	ENSCINP00000004058	TAF domain-containing protein.	TFIID_20kDa domain-containing protein.	0.968
F6RG39_CIOIN	F6QNK0_CIOIN	ENSCINP00000023962	ENSCINP00000009720	SGF29 C-terminal domain-containing protein.	TAF domain-containing protein.	0.827
F6RG39_CIOIN	F6RL41_CIOIN	ENSCINP00000023962	ENSCINP00000001174	SGF29 C-terminal domain-containing protein.	FAT domain-containing protein.	0.836
F6RG39_CIOIN	F6SEM6_CIOIN	ENSCINP00000023962	ENSCINP00000000728	SGF29 C-terminal domain-containing protein.	SAGA-associated factor 11 homolog; Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription.	0.905
F6RG39_CIOIN	F6YGZ1_CIOIN	ENSCINP00000023962	ENSCINP00000008460	SGF29 C-terminal domain-containing protein.	Uncharacterized protein.	0.734
F6RG39_CIOIN	F7AWC6_CIOIN	ENSCINP00000023962	ENSCINP00000011057	SGF29 C-terminal domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.734
F6RG39_CIOIN	F7B826_CIOIN	ENSCINP00000023962	ENSCINP00000027223	SGF29 C-terminal domain-containing protein.	Uncharacterized protein.	0.942
F6RG39_CIOIN	H2XW76_CIOIN	ENSCINP00000023962	ENSCINP00000033910	SGF29 C-terminal domain-containing protein.	TAF domain-containing protein.	0.898