(57 nodes) Sperm flagellum network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6ZR21_CIOIN	Uncharacterized protein. (250 aa)
	LOC100184287	Uncharacterized protein. (902 aa)
	LOC100187286	Uncharacterized protein. (874 aa)
	F6UHX8_CIOIN	Uncharacterized protein. (177 aa)
	F6V8Z4_CIOIN	Uncharacterized protein. (256 aa)
	F7ADV8_CIOIN	Uncharacterized protein. (648 aa)
	F7ADW3_CIOIN	Uncharacterized protein. (990 aa)
	F6RAI3_CIOIN	Uncharacterized protein. (172 aa)
	F6WXB6_CIOIN	Na_H_Exchanger domain-containing protein. (462 aa)
	LOC100183423	Tctex1 domain-containing protein 2 isoform X1. (236 aa)
	LOC100185844	Hydrolase_4 domain-containing protein. (396 aa)
	LOC100178079	Sperm-associated antigen 16 protein. (606 aa)
	F6YMF0_CIOIN	Uncharacterized protein. (348 aa)
	Ic1	Uncharacterized protein. (594 aa)
	F6XBR0_CIOIN	Uncharacterized protein. (283 aa)
	F6R472_CIOIN	CULLIN_2 domain-containing protein; Belongs to the cullin family. (707 aa)
	LOC100181294	Uncharacterized protein. (830 aa)
	LOC100186420	Dynein regulatory complex subunit 3-like. (519 aa)
	F6W9U8_CIOIN	PB1 domain-containing protein. (224 aa)
	LOC100181020	A-kinase anchor protein 14-like. (177 aa)
	Tkr	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (352 aa)
	F7A7P7_CIOIN	Enkurin domain-containing protein. (258 aa)
	F7ASC5_CIOIN	Uncharacterized protein. (416 aa)
	LOC100179487	Myosin-14-like. (531 aa)
	ciic3	Thioredoxin domain-containing protein 3 homolog; May be required during the final stages of sperm tail maturation. May act by reducing disulfide bonds within the sperm components (By similarity). (653 aa)
	LOC100179482	Stabilizer of axonemal microtubules 2. (452 aa)
	F6Q427_CIOIN	Uncharacterized protein. (897 aa)
	ci-morn40	Radial spoke protein MORN40. (300 aa)
	LOC100184622	TPR_REGION domain-containing protein. (419 aa)
	F6QNG1_CIOIN	Uncharacterized protein. (244 aa)
	LOC100182123	GAS domain-containing protein. (363 aa)
	ci-ndk/dpy26	Radial spoke protein NDK/DPY26; Belongs to the NDK family. (257 aa)
	LOC100182630	Intraflagellar transport protein 81 homolog. (679 aa)
	F6XIK1_CIOIN	Uncharacterized protein. (377 aa)
	LOC100180066	Sodium/hydrogen exchanger 9B2-like. (535 aa)
	H2Y2C9_CIOIN	Uncharacterized protein. (239 aa)
	LOC100182997	33 kDa inner dynein arm light chain, axonemal. (257 aa)
	LOC100177695	Uncharacterized protein. (236 aa)
	H2XXB3_CIOIN	Uncharacterized protein. (161 aa)
	H2XW86_CIOIN	Uncharacterized protein. (262 aa)
	LOC100175581	Uncharacterized protein LOC100175581. (186 aa)
	H2XT39_CIOIN	Uncharacterized protein. (494 aa)
	H2XSS3_CIOIN	Uncharacterized protein. (95 aa)
	H2XQH8_CIOIN	Uncharacterized protein. (151 aa)
	LOC100177670	Uncharacterized protein. (152 aa)
	H2XMJ3_CIOIN	Uncharacterized protein. (346 aa)
	H2XKM9_CIOIN	Uncharacterized protein. (182 aa)
	H2XJT3_CIOIN	Uncharacterized protein. (317 aa)
	F6W5C2_CIOIN	Uncharacterized protein. (776 aa)
	LOC100180402	Uncharacterized protein. (496 aa)
	LOC100179428	RIIa domain-containing protein. (234 aa)
	F6UMX9_CIOIN	Uncharacterized protein. (425 aa)
	Pf16	Uncharacterized protein. (171 aa)
	F6T5L0_CIOIN	Uncharacterized protein. (343 aa)
	F6TT24_CIOIN	Uncharacterized protein. (184 aa)
	F6TT48_CIOIN	Uncharacterized protein. (194 aa)
	LOC100184598	Sequestosome-1 isoform X1. (329 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6Q427_CIOIN	F6V8Z4_CIOIN	ENSCINP00000013016	ENSCINP00000022808	Uncharacterized protein.	Uncharacterized protein.	0.456
F6Q427_CIOIN	F6W5C2_CIOIN	ENSCINP00000013016	ENSCINP00000028061	Uncharacterized protein.	Uncharacterized protein.	0.456
F6R472_CIOIN	F6W9U8_CIOIN	ENSCINP00000006037	ENSCINP00000002565	CULLIN_2 domain-containing protein; Belongs to the cullin family.	PB1 domain-containing protein.	0.483
F6R472_CIOIN	LOC100175581	ENSCINP00000006037	ENSCINP00000033899	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein LOC100175581.	0.483
F6R472_CIOIN	LOC100184598	ENSCINP00000006037	ENSCINP00000023991	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Sequestosome-1 isoform X1.	0.483
F6TT24_CIOIN	F7ASC5_CIOIN	ENSCINP00000024094	ENSCINP00000013724	Uncharacterized protein.	Uncharacterized protein.	0.440
F6TT24_CIOIN	H2XJT3_CIOIN	ENSCINP00000024094	ENSCINP00000029915	Uncharacterized protein.	Uncharacterized protein.	0.433
F6TT48_CIOIN	F7A7P7_CIOIN	ENSCINP00000024091	ENSCINP00000013781	Uncharacterized protein.	Enkurin domain-containing protein.	0.469
F6TT48_CIOIN	H2XT39_CIOIN	ENSCINP00000024091	ENSCINP00000032823	Uncharacterized protein.	Uncharacterized protein.	0.475
F6TT48_CIOIN	LOC100177695	ENSCINP00000024091	ENSCINP00000034397	Uncharacterized protein.	Uncharacterized protein.	0.410
F6UHX8_CIOIN	F6YMF0_CIOIN	ENSCINP00000022848	ENSCINP00000016585	Uncharacterized protein.	Uncharacterized protein.	0.945
F6UHX8_CIOIN	H2Y2C9_CIOIN	ENSCINP00000022848	ENSCINP00000036064	Uncharacterized protein.	Uncharacterized protein.	0.899
F6V8Z4_CIOIN	F6Q427_CIOIN	ENSCINP00000022808	ENSCINP00000013016	Uncharacterized protein.	Uncharacterized protein.	0.456
F6V8Z4_CIOIN	F6W5C2_CIOIN	ENSCINP00000022808	ENSCINP00000028061	Uncharacterized protein.	Uncharacterized protein.	0.456
F6W5C2_CIOIN	F6Q427_CIOIN	ENSCINP00000028061	ENSCINP00000013016	Uncharacterized protein.	Uncharacterized protein.	0.456
F6W5C2_CIOIN	F6V8Z4_CIOIN	ENSCINP00000028061	ENSCINP00000022808	Uncharacterized protein.	Uncharacterized protein.	0.456
F6W9U8_CIOIN	F6R472_CIOIN	ENSCINP00000002565	ENSCINP00000006037	PB1 domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.483
F6W9U8_CIOIN	LOC100184598	ENSCINP00000002565	ENSCINP00000023991	PB1 domain-containing protein.	Sequestosome-1 isoform X1.	0.909
F6XIK1_CIOIN	LOC100186420	ENSCINP00000007618	ENSCINP00000003500	Uncharacterized protein.	Dynein regulatory complex subunit 3-like.	0.496
F6YMF0_CIOIN	F6UHX8_CIOIN	ENSCINP00000016585	ENSCINP00000022848	Uncharacterized protein.	Uncharacterized protein.	0.945