(28 nodes) Cellular response to glucose starvation network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100182401	Beclin 1-associated autophagy-related key regulator. (512 aa)
	F6SLD6_CIOIN	Deacetylase sirtuin-type domain-containing protein. (737 aa)
	H2XXR6_CIOIN	Protein kinase domain-containing protein. (722 aa)
	H2XSU3_CIOIN	Uncharacterized protein. (704 aa)
	F6YSG2_CIOIN	RWD domain-containing protein. (260 aa)
	LOC100175829	KICSTOR complex protein C12orf66 homolog. (440 aa)
	Xbpc	BZIP domain-containing protein. (437 aa)
	xbpb	Transcription factor protein. (238 aa)
	LOC100176045	Serine/threonine-protein kinase NIM1 isoform X1. (508 aa)
	LOC101242470	Uncharacterized protein; Belongs to the heat shock protein 70 family. (659 aa)
	LOC100186609	Uncharacterized protein; Belongs to the heat shock protein 70 family. (671 aa)
	Mist	BHLH domain-containing protein. (550 aa)
	F6R407_CIOIN	Uncharacterized protein. (1023 aa)
	F6T7E5_CIOIN	Uncharacterized protein. (478 aa)
	xbpd	Transcription factor protein isoform X1. (366 aa)
	F7BH38_CIOIN	Uncharacterized protein. (326 aa)
	F7ARU3_CIOIN	Uncharacterized protein. (444 aa)
	F6UCD8_CIOIN	Uncharacterized protein. (681 aa)
	LOC100184385	Serine/threonine-protein kinase SIK2 isoform X2. (970 aa)
	F7ATG5_CIOIN	Uncharacterized protein. (451 aa)
	Xbpa	BZIP domain-containing protein. (309 aa)
	F6VXQ6_CIOIN	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (272 aa)
	F6ZLY9_CIOIN	Uncharacterized protein. (343 aa)
	H2XJF2_CIOIN	Phosphatidylinositol 3-kinase catalytic subunit type 3. (931 aa)
	F6WNH2_CIOIN	Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family. (315 aa)
	LOC100184788	Non-specific serine/threonine protein kinase. (554 aa)
	F6PHN1_CIOIN	Protein kinase domain-containing protein. (1026 aa)
	LOC100186582	Phosphoinositide 3-kinase regulatory subunit 4. (1337 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6PHN1_CIOIN	LOC100186609	ENSCINP00000006293	ENSCINP00000019205	Protein kinase domain-containing protein.	Uncharacterized protein; Belongs to the heat shock protein 70 family.	0.802
F6PHN1_CIOIN	LOC101242470	ENSCINP00000006293	ENSCINP00000019494	Protein kinase domain-containing protein.	Uncharacterized protein; Belongs to the heat shock protein 70 family.	0.802
F6SLD6_CIOIN	F6WNH2_CIOIN	ENSCINP00000027486	ENSCINP00000006739	Deacetylase sirtuin-type domain-containing protein.	Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family.	0.819
F6SLD6_CIOIN	LOC100184788	ENSCINP00000027486	ENSCINP00000006320	Deacetylase sirtuin-type domain-containing protein.	Non-specific serine/threonine protein kinase.	0.548
F6T7E5_CIOIN	F6UCD8_CIOIN	ENSCINP00000015711	ENSCINP00000012975	Uncharacterized protein.	Uncharacterized protein.	0.507
F6T7E5_CIOIN	F6ZLY9_CIOIN	ENSCINP00000015711	ENSCINP00000008139	Uncharacterized protein.	Uncharacterized protein.	0.534
F6T7E5_CIOIN	F7ARU3_CIOIN	ENSCINP00000015711	ENSCINP00000013737	Uncharacterized protein.	Uncharacterized protein.	0.502
F6T7E5_CIOIN	F7BH38_CIOIN	ENSCINP00000015711	ENSCINP00000014670	Uncharacterized protein.	Uncharacterized protein.	0.507
F6T7E5_CIOIN	H2XSU3_CIOIN	ENSCINP00000015711	ENSCINP00000032727	Uncharacterized protein.	Uncharacterized protein.	0.539
F6T7E5_CIOIN	LOC100175829	ENSCINP00000015711	ENSCINP00000025040	Uncharacterized protein.	KICSTOR complex protein C12orf66 homolog.	0.472
F6T7E5_CIOIN	LOC100184788	ENSCINP00000015711	ENSCINP00000006320	Uncharacterized protein.	Non-specific serine/threonine protein kinase.	0.646
F6UCD8_CIOIN	F6T7E5_CIOIN	ENSCINP00000012975	ENSCINP00000015711	Uncharacterized protein.	Uncharacterized protein.	0.507
F6UCD8_CIOIN	F7BH38_CIOIN	ENSCINP00000012975	ENSCINP00000014670	Uncharacterized protein.	Uncharacterized protein.	0.906
F6UCD8_CIOIN	H2XJF2_CIOIN	ENSCINP00000012975	ENSCINP00000006956	Uncharacterized protein.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.605
F6UCD8_CIOIN	LOC100176045	ENSCINP00000012975	ENSCINP00000020105	Uncharacterized protein.	Serine/threonine-protein kinase NIM1 isoform X1.	0.498
F6UCD8_CIOIN	LOC100184788	ENSCINP00000012975	ENSCINP00000006320	Uncharacterized protein.	Non-specific serine/threonine protein kinase.	0.993
F6UCD8_CIOIN	LOC100186582	ENSCINP00000012975	ENSCINP00000005460	Uncharacterized protein.	Phosphoinositide 3-kinase regulatory subunit 4.	0.585
F6WNH2_CIOIN	F6SLD6_CIOIN	ENSCINP00000006739	ENSCINP00000027486	Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family.	Deacetylase sirtuin-type domain-containing protein.	0.819
F6ZLY9_CIOIN	F6T7E5_CIOIN	ENSCINP00000008139	ENSCINP00000015711	Uncharacterized protein.	Uncharacterized protein.	0.534
F6ZLY9_CIOIN	F7ARU3_CIOIN	ENSCINP00000008139	ENSCINP00000013737	Uncharacterized protein.	Uncharacterized protein.	0.980