(17 nodes) Regulation of protein import into nucleus network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6ZF56_CIOIN	Uncharacterized protein. (521 aa)
	F6WB99_CIOIN	Uncharacterized protein. (401 aa)
	LOC100182595	Ras-related protein Rab-23. (243 aa)
	Sir2-d	Deacetylase sirtuin-type domain-containing protein. (91 aa)
	Smoothened	Uncharacterized protein; Belongs to the G-protein coupled receptor Fz/Smo family. (441 aa)
	LOC100178840	Uncharacterized protein. (600 aa)
	F6TLB6_CIOIN	Uncharacterized protein. (891 aa)
	F6ZM08_CIOIN	Uncharacterized protein. (782 aa)
	LOC100182924	Nucleoporin p58/p45. (478 aa)
	zf(c3h)-12	Uncharacterized protein. (413 aa)
	F7AHP3_CIOIN	Uncharacterized protein. (2812 aa)
	F6QE47_CIOIN	Uncharacterized protein. (433 aa)
	F6W3W9_CIOIN	Uncharacterized protein. (758 aa)
	F6PNC3_CIOIN	Uncharacterized protein. (1086 aa)
	F6T2G1_CIOIN	Uncharacterized protein. (298 aa)
	H2XMA8_CIOIN	Uncharacterized protein. (446 aa)
	LOC100178190	Calcineurin B homologous protein 1-like. (189 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6PNC3_CIOIN	F6ZF56_CIOIN	ENSCINP00000028708	ENSCINP00000017696	Uncharacterized protein.	Uncharacterized protein.	0.665
F6PNC3_CIOIN	LOC100182924	ENSCINP00000028708	ENSCINP00000010335	Uncharacterized protein.	Nucleoporin p58/p45.	0.531
F6T2G1_CIOIN	F6TLB6_CIOIN	ENSCINP00000029547	ENSCINP00000007196	Uncharacterized protein.	Uncharacterized protein.	0.950
F6T2G1_CIOIN	F6W3W9_CIOIN	ENSCINP00000029547	ENSCINP00000028344	Uncharacterized protein.	Uncharacterized protein.	0.946
F6TLB6_CIOIN	F6T2G1_CIOIN	ENSCINP00000007196	ENSCINP00000029547	Uncharacterized protein.	Uncharacterized protein.	0.950
F6TLB6_CIOIN	F6W3W9_CIOIN	ENSCINP00000007196	ENSCINP00000028344	Uncharacterized protein.	Uncharacterized protein.	0.949
F6W3W9_CIOIN	F6T2G1_CIOIN	ENSCINP00000028344	ENSCINP00000029547	Uncharacterized protein.	Uncharacterized protein.	0.946
F6W3W9_CIOIN	F6TLB6_CIOIN	ENSCINP00000028344	ENSCINP00000007196	Uncharacterized protein.	Uncharacterized protein.	0.949
F6WB99_CIOIN	F6ZF56_CIOIN	ENSCINP00000002206	ENSCINP00000017696	Uncharacterized protein.	Uncharacterized protein.	0.665
F6WB99_CIOIN	LOC100182924	ENSCINP00000002206	ENSCINP00000010335	Uncharacterized protein.	Nucleoporin p58/p45.	0.531
F6ZF56_CIOIN	F6PNC3_CIOIN	ENSCINP00000017696	ENSCINP00000028708	Uncharacterized protein.	Uncharacterized protein.	0.665
F6ZF56_CIOIN	F6WB99_CIOIN	ENSCINP00000017696	ENSCINP00000002206	Uncharacterized protein.	Uncharacterized protein.	0.665
F6ZF56_CIOIN	LOC100182924	ENSCINP00000017696	ENSCINP00000010335	Uncharacterized protein.	Nucleoporin p58/p45.	0.986
LOC100182595	Smoothened	ENSCINP00000002173	ENSCINP00000002708	Ras-related protein Rab-23.	Uncharacterized protein; Belongs to the G-protein coupled receptor Fz/Smo family.	0.531
LOC100182924	F6PNC3_CIOIN	ENSCINP00000010335	ENSCINP00000028708	Nucleoporin p58/p45.	Uncharacterized protein.	0.531
LOC100182924	F6WB99_CIOIN	ENSCINP00000010335	ENSCINP00000002206	Nucleoporin p58/p45.	Uncharacterized protein.	0.531
LOC100182924	F6ZF56_CIOIN	ENSCINP00000010335	ENSCINP00000017696	Nucleoporin p58/p45.	Uncharacterized protein.	0.986
Smoothened	LOC100182595	ENSCINP00000002708	ENSCINP00000002173	Uncharacterized protein; Belongs to the G-protein coupled receptor Fz/Smo family.	Ras-related protein Rab-23.	0.531