(7 nodes) Water-soluble vitamin biosynthetic process network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2Y0E1_CIOIN	ALO domain-containing protein. (73 aa)
	LOC100184729	Regucalcin-like. (300 aa)
	LOC100179166	Pyridoxal 5'-phosphate synthase subunit SNZERR; Belongs to the PdxS/SNZ family. (298 aa)
	LOC100176842	Uncharacterized protein LOC100176842 isoform X2. (222 aa)
	F6RT01_CIOIN	Uncharacterized protein. (253 aa)
	LOC100178162	Pyridoxal kinase-like. (308 aa)
	H2Y3J4_CIOIN	Flavokinase domain-containing protein. (181 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6RT01_CIOIN	H2Y3J4_CIOIN	ENSCINP00000011903	ENSCINP00000036479	Uncharacterized protein.	Flavokinase domain-containing protein.	0.611
F6RT01_CIOIN	LOC100176842	ENSCINP00000011903	ENSCINP00000012919	Uncharacterized protein.	Uncharacterized protein LOC100176842 isoform X2.	0.966
F6RT01_CIOIN	LOC100178162	ENSCINP00000011903	ENSCINP00000009471	Uncharacterized protein.	Pyridoxal kinase-like.	0.989
F6RT01_CIOIN	LOC100179166	ENSCINP00000011903	ENSCINP00000013057	Uncharacterized protein.	Pyridoxal 5'-phosphate synthase subunit SNZERR; Belongs to the PdxS/SNZ family.	0.949
H2Y0E1_CIOIN	LOC100184729	ENSCINP00000035375	ENSCINP00000021857	ALO domain-containing protein.	Regucalcin-like.	0.950
H2Y3J4_CIOIN	F6RT01_CIOIN	ENSCINP00000036479	ENSCINP00000011903	Flavokinase domain-containing protein.	Uncharacterized protein.	0.611
LOC100176842	F6RT01_CIOIN	ENSCINP00000012919	ENSCINP00000011903	Uncharacterized protein LOC100176842 isoform X2.	Uncharacterized protein.	0.966
LOC100176842	LOC100178162	ENSCINP00000012919	ENSCINP00000009471	Uncharacterized protein LOC100176842 isoform X2.	Pyridoxal kinase-like.	0.953
LOC100176842	LOC100179166	ENSCINP00000012919	ENSCINP00000013057	Uncharacterized protein LOC100176842 isoform X2.	Pyridoxal 5'-phosphate synthase subunit SNZERR; Belongs to the PdxS/SNZ family.	0.999
LOC100178162	F6RT01_CIOIN	ENSCINP00000009471	ENSCINP00000011903	Pyridoxal kinase-like.	Uncharacterized protein.	0.989
LOC100178162	LOC100176842	ENSCINP00000009471	ENSCINP00000012919	Pyridoxal kinase-like.	Uncharacterized protein LOC100176842 isoform X2.	0.953
LOC100178162	LOC100179166	ENSCINP00000009471	ENSCINP00000013057	Pyridoxal kinase-like.	Pyridoxal 5'-phosphate synthase subunit SNZERR; Belongs to the PdxS/SNZ family.	0.926
LOC100179166	F6RT01_CIOIN	ENSCINP00000013057	ENSCINP00000011903	Pyridoxal 5'-phosphate synthase subunit SNZERR; Belongs to the PdxS/SNZ family.	Uncharacterized protein.	0.949
LOC100179166	LOC100176842	ENSCINP00000013057	ENSCINP00000012919	Pyridoxal 5'-phosphate synthase subunit SNZERR; Belongs to the PdxS/SNZ family.	Uncharacterized protein LOC100176842 isoform X2.	0.999
LOC100179166	LOC100178162	ENSCINP00000013057	ENSCINP00000009471	Pyridoxal 5'-phosphate synthase subunit SNZERR; Belongs to the PdxS/SNZ family.	Pyridoxal kinase-like.	0.926
LOC100184729	H2Y0E1_CIOIN	ENSCINP00000021857	ENSCINP00000035375	Regucalcin-like.	ALO domain-containing protein.	0.950