(12 nodes) Golgi to plasma membrane protein transport network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2Y3F6_CIOIN	Uncharacterized protein. (397 aa)
	LOC100180419	Golgi phosphoprotein 3-like. (291 aa)
	F6ZZ65_CIOIN	Uncharacterized protein. (582 aa)
	LOC100186591	Golgin-45. (382 aa)
	F6WAD4_CIOIN	AAA domain-containing protein; Belongs to the AAA ATPase family. (461 aa)
	F6WAC8_CIOIN	CDC48_N domain-containing protein. (222 aa)
	F6W510_CIOIN	Uncharacterized protein. (704 aa)
	LOC100184123	Bardet-Biedl syndrome 2 protein homolog. (708 aa)
	F7AFQ9_CIOIN	Uncharacterized protein. (482 aa)
	H2XR15_CIOIN	Uncharacterized protein. (223 aa)
	LOC100184292	ADP-ribosylation factor-related protein 1-like. (201 aa)
	LOC100186168	Ras-related protein Rab-26-like. (223 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6WAC8_CIOIN	LOC100184292	ENSCINP00000014224	ENSCINP00000033624	CDC48_N domain-containing protein.	ADP-ribosylation factor-related protein 1-like.	0.450
F6WAD4_CIOIN	LOC100184292	ENSCINP00000014222	ENSCINP00000033624	AAA domain-containing protein; Belongs to the AAA ATPase family.	ADP-ribosylation factor-related protein 1-like.	0.450
F6ZZ65_CIOIN	LOC100184123	ENSCINP00000012520	ENSCINP00000025380	Uncharacterized protein.	Bardet-Biedl syndrome 2 protein homolog.	0.988
F7AFQ9_CIOIN	LOC100184292	ENSCINP00000026033	ENSCINP00000033624	Uncharacterized protein.	ADP-ribosylation factor-related protein 1-like.	0.402
LOC100184123	F6ZZ65_CIOIN	ENSCINP00000025380	ENSCINP00000012520	Bardet-Biedl syndrome 2 protein homolog.	Uncharacterized protein.	0.988
LOC100184292	F6WAC8_CIOIN	ENSCINP00000033624	ENSCINP00000014224	ADP-ribosylation factor-related protein 1-like.	CDC48_N domain-containing protein.	0.450
LOC100184292	F6WAD4_CIOIN	ENSCINP00000033624	ENSCINP00000014222	ADP-ribosylation factor-related protein 1-like.	AAA domain-containing protein; Belongs to the AAA ATPase family.	0.450
LOC100184292	F7AFQ9_CIOIN	ENSCINP00000033624	ENSCINP00000026033	ADP-ribosylation factor-related protein 1-like.	Uncharacterized protein.	0.402