(24 nodes) Movement in host network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100180144	Vacuolar protein sorting-associated protein 4B-like; Belongs to the AAA ATPase family. (438 aa)
	LOC100185122	Uncharacterized protein. (863 aa)
	F7BAT7_CIOIN	Prohibitin. (271 aa)
	LOC100177697	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (236 aa)
	F6ZYB8_CIOIN	Sphingomyelin phosphodiesterase; Converts sphingomyelin to ceramide. Belongs to the acid sphingomyelinase family. (599 aa)
	F6SCE7_CIOIN	Uncharacterized protein. (361 aa)
	LOC100186563	Sphingomyelin phosphodiesterase; Converts sphingomyelin to ceramide. Belongs to the acid sphingomyelinase family. (599 aa)
	LOC100176174	Uncharacterized protein. (221 aa)
	LOC100176751	UV radiation resistance associated protein. (760 aa)
	F7ANR5_CIOIN	CPSF_A domain-containing protein. (1145 aa)
	LOC100181512	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. (1186 aa)
	F6QHM7_CIOIN	Uncharacterized protein. (725 aa)
	F6Q9D5_CIOIN	Metallophos domain-containing protein. (435 aa)
	F6Z402_CIOIN	Peptidase S72 domain-containing protein. (410 aa)
	F6XJU3_CIOIN	Uncharacterized protein. (1922 aa)
	LOC100175291	Uncharacterized protein LOC100175291. (180 aa)
	LOC100179674	Vacuolar protein sorting-associated protein 37B-like. (252 aa)
	LOC100175475	Uncharacterized protein LOC100175475 isoform X2. (654 aa)
	LOC100178450	Apoptosis regulatory protein Siva-like isoform X1. (164 aa)
	LOC100183075	Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family. (215 aa)
	LOC100178517	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (142 aa)
	LOC104265386	Uncharacterized protein. (402 aa)
	H2XPE2_CIOIN	Uncharacterized protein. (744 aa)
	H2XUP2_CIOIN	V-SNARE coiled-coil homology domain-containing protein. (84 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6SCE7_CIOIN	LOC100175291	ENSCINP00000005933	ENSCINP00000021680	Uncharacterized protein.	Uncharacterized protein LOC100175291.	0.923
F6SCE7_CIOIN	LOC100176174	ENSCINP00000005933	ENSCINP00000009335	Uncharacterized protein.	Uncharacterized protein.	0.923
F6SCE7_CIOIN	LOC100180144	ENSCINP00000005933	ENSCINP00000013451	Uncharacterized protein.	Vacuolar protein sorting-associated protein 4B-like; Belongs to the AAA ATPase family.	0.923
F6SCE7_CIOIN	LOC104265386	ENSCINP00000005933	ENSCINP00000031475	Uncharacterized protein.	Uncharacterized protein.	0.543
F6ZYB8_CIOIN	LOC100186563	ENSCINP00000005699	ENSCINP00000006326	Sphingomyelin phosphodiesterase; Converts sphingomyelin to ceramide. Belongs to the acid sphingomyelinase family.	Sphingomyelin phosphodiesterase; Converts sphingomyelin to ceramide. Belongs to the acid sphingomyelinase family.	0.908
H2XUP2_CIOIN	LOC100185122	ENSCINP00000033376	ENSCINP00000000564	V-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.536
LOC100175291	F6SCE7_CIOIN	ENSCINP00000021680	ENSCINP00000005933	Uncharacterized protein LOC100175291.	Uncharacterized protein.	0.923
LOC100175291	LOC100176174	ENSCINP00000021680	ENSCINP00000009335	Uncharacterized protein LOC100175291.	Uncharacterized protein.	0.858
LOC100175291	LOC104265386	ENSCINP00000021680	ENSCINP00000031475	Uncharacterized protein LOC100175291.	Uncharacterized protein.	0.552
LOC100176174	F6SCE7_CIOIN	ENSCINP00000009335	ENSCINP00000005933	Uncharacterized protein.	Uncharacterized protein.	0.923
LOC100176174	LOC100175291	ENSCINP00000009335	ENSCINP00000021680	Uncharacterized protein.	Uncharacterized protein LOC100175291.	0.858
LOC100176174	LOC100179674	ENSCINP00000009335	ENSCINP00000022467	Uncharacterized protein.	Vacuolar protein sorting-associated protein 37B-like.	0.927
LOC100176174	LOC100180144	ENSCINP00000009335	ENSCINP00000013451	Uncharacterized protein.	Vacuolar protein sorting-associated protein 4B-like; Belongs to the AAA ATPase family.	0.858
LOC100176174	LOC104265386	ENSCINP00000009335	ENSCINP00000031475	Uncharacterized protein.	Uncharacterized protein.	0.931
LOC100179674	LOC100176174	ENSCINP00000022467	ENSCINP00000009335	Vacuolar protein sorting-associated protein 37B-like.	Uncharacterized protein.	0.927
LOC100179674	LOC104265386	ENSCINP00000022467	ENSCINP00000031475	Vacuolar protein sorting-associated protein 37B-like.	Uncharacterized protein.	0.998
LOC100180144	F6SCE7_CIOIN	ENSCINP00000013451	ENSCINP00000005933	Vacuolar protein sorting-associated protein 4B-like; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.923
LOC100180144	LOC100176174	ENSCINP00000013451	ENSCINP00000009335	Vacuolar protein sorting-associated protein 4B-like; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.858
LOC100180144	LOC104265386	ENSCINP00000013451	ENSCINP00000031475	Vacuolar protein sorting-associated protein 4B-like; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.556
LOC100185122	H2XUP2_CIOIN	ENSCINP00000000564	ENSCINP00000033376	Uncharacterized protein.	V-SNARE coiled-coil homology domain-containing protein.	0.536