(25 nodes) Transmembrane transporter binding network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100177697	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (236 aa)
	F6YRG2_CIOIN	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (211 aa)
	H2Y0K6_CIOIN	Uncharacterized protein. (3252 aa)
	F6YD53_CIOIN	Aldo_ket_red domain-containing protein. (332 aa)
	F6XD08_CIOIN	ANK_REP_REGION domain-containing protein. (765 aa)
	F6R999_CIOIN	Uncharacterized protein. (807 aa)
	H2Y204_CIOIN	Uncharacterized protein. (246 aa)
	kcnq1	Uncharacterized protein; Belongs to the potassium channel family. (520 aa)
	LOC100176909	Ubiquitin carboxyl-terminal hydrolase 10-like; Belongs to the peptidase C19 family. (714 aa)
	LOC100183479	Ankyrin repeat domain-containing protein 60. (367 aa)
	H2Y3R8_CIOIN	Uncharacterized protein. (229 aa)
	LOC100175281	Uncharacterized protein. (857 aa)
	LOC100179311	MAGUK p55 subfamily member 6-like; Belongs to the MAGUK family. (498 aa)
	F6WCT6_CIOIN	PDZ domain-containing protein. (347 aa)
	LOC100175173	Ubiquitin-like domain-containing protein. (343 aa)
	F7AD14_CIOIN	Uncharacterized protein. (118 aa)
	F6U959_CIOIN	Uncharacterized protein. (948 aa)
	F6ZLD5_CIOIN	Protein kinase domain-containing protein. (164 aa)
	Htt	Uncharacterized protein. (639 aa)
	LOC100178517	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (142 aa)
	H2XNV5_CIOIN	Uncharacterized protein. (927 aa)
	H2XS27_CIOIN	Uncharacterized protein. (75 aa)
	H2XU38_CIOIN	ANK_REP_REGION domain-containing protein. (156 aa)
	H2XY78_CIOIN	Uncharacterized protein. (207 aa)
	H2XYD9_CIOIN	AAA_9 domain-containing protein. (160 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6U959_CIOIN	LOC100179311	ENSCINP00000021734	ENSCINP00000017050	Uncharacterized protein.	MAGUK p55 subfamily member 6-like; Belongs to the MAGUK family.	0.460
F6XD08_CIOIN	H2Y3R8_CIOIN	ENSCINP00000009430	ENSCINP00000036553	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.900
F6YD53_CIOIN	kcnq1	ENSCINP00000005438	ENSCINP00000011044	Aldo_ket_red domain-containing protein.	Uncharacterized protein; Belongs to the potassium channel family.	0.600
F6YRG2_CIOIN	LOC100177697	ENSCINP00000002792	ENSCINP00000002782	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	0.494
F6YRG2_CIOIN	LOC100178517	ENSCINP00000002792	ENSCINP00000030917	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	0.491
H2XU38_CIOIN	H2XYD9_CIOIN	ENSCINP00000033172	ENSCINP00000034673	ANK_REP_REGION domain-containing protein.	AAA_9 domain-containing protein.	0.946
H2XY78_CIOIN	H2Y204_CIOIN	ENSCINP00000034612	ENSCINP00000035939	Uncharacterized protein.	Uncharacterized protein.	0.529
H2XY78_CIOIN	Htt	ENSCINP00000034612	ENSCINP00000027572	Uncharacterized protein.	Uncharacterized protein.	0.657
H2XYD9_CIOIN	H2XU38_CIOIN	ENSCINP00000034673	ENSCINP00000033172	AAA_9 domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.946
H2Y204_CIOIN	H2XY78_CIOIN	ENSCINP00000035939	ENSCINP00000034612	Uncharacterized protein.	Uncharacterized protein.	0.529
H2Y204_CIOIN	Htt	ENSCINP00000035939	ENSCINP00000027572	Uncharacterized protein.	Uncharacterized protein.	0.931
H2Y3R8_CIOIN	F6XD08_CIOIN	ENSCINP00000036553	ENSCINP00000009430	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.900
Htt	H2XY78_CIOIN	ENSCINP00000027572	ENSCINP00000034612	Uncharacterized protein.	Uncharacterized protein.	0.657
Htt	H2Y204_CIOIN	ENSCINP00000027572	ENSCINP00000035939	Uncharacterized protein.	Uncharacterized protein.	0.931
LOC100177697	F6YRG2_CIOIN	ENSCINP00000002782	ENSCINP00000002792	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	0.494
LOC100178517	F6YRG2_CIOIN	ENSCINP00000030917	ENSCINP00000002792	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	0.491
LOC100179311	F6U959_CIOIN	ENSCINP00000017050	ENSCINP00000021734	MAGUK p55 subfamily member 6-like; Belongs to the MAGUK family.	Uncharacterized protein.	0.460
kcnq1	F6YD53_CIOIN	ENSCINP00000011044	ENSCINP00000005438	Uncharacterized protein; Belongs to the potassium channel family.	Aldo_ket_red domain-containing protein.	0.600