(8 nodes) Chitosome network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2Y0D0_CIOIN	Uncharacterized protein. (135 aa)
	H2XYB3_CIOIN	Uncharacterized protein. (810 aa)
	LOC100185647	Uncharacterized protein. (525 aa)
	LOC100183094	Ras-related protein rab7-like. (206 aa)
	LOC100178266	Uncharacterized protein. (213 aa)
	F6SPL0_CIOIN	Uncharacterized protein. (503 aa)
	F6UGD7_CIOIN	Uncharacterized protein. (469 aa)
	LOC100187335	Cystinosin. (399 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6SPL0_CIOIN	F6UGD7_CIOIN	ENSCINP00000010070	ENSCINP00000008838	Uncharacterized protein.	Uncharacterized protein.	0.602
F6SPL0_CIOIN	LOC100185647	ENSCINP00000010070	ENSCINP00000019001	Uncharacterized protein.	Uncharacterized protein.	0.901
F6UGD7_CIOIN	F6SPL0_CIOIN	ENSCINP00000008838	ENSCINP00000010070	Uncharacterized protein.	Uncharacterized protein.	0.602
F6UGD7_CIOIN	LOC100185647	ENSCINP00000008838	ENSCINP00000019001	Uncharacterized protein.	Uncharacterized protein.	0.601
LOC100185647	F6SPL0_CIOIN	ENSCINP00000019001	ENSCINP00000010070	Uncharacterized protein.	Uncharacterized protein.	0.901
LOC100185647	F6UGD7_CIOIN	ENSCINP00000019001	ENSCINP00000008838	Uncharacterized protein.	Uncharacterized protein.	0.601