(27 nodes) Homologous chromosome segregation network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100186210	Nucleoporin NDC1. (646 aa)
	F6ZGA4_CIOIN	Uncharacterized protein. (135 aa)
	F6RJ65_CIOIN	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (268 aa)
	F6YKR1_CIOIN	DNA_MISMATCH_REPAIR_2 domain-containing protein. (788 aa)
	LOC100182917	Uncharacterized protein. (127 aa)
	LOC100182748	DNA_mis_repair domain-containing protein. (751 aa)
	LOC100182936	RING finger protein 212B-like isoform X1. (310 aa)
	LOC100180409	Meiotic recombination protein SPO11. (385 aa)
	LOC100184172	Uncharacterized protein. (391 aa)
	F7AQS5_CIOIN	Peptidase C50 domain-containing protein. (234 aa)
	F6VVB7_CIOIN	Cyclin N-terminal domain-containing protein; Belongs to the cyclin family. (315 aa)
	LOC100176076	Uncharacterized protein LOC100176076. (657 aa)
	LOC100187186	Meiotic nuclear division protein 1 homolog; Required for proper homologous chromosome pairing and efficient cross-over and intragenic recombination during meiosis. Belongs to the MND1 family. (205 aa)
	F6R213_CIOIN	Uncharacterized protein. (1264 aa)
	LOC100182488	E3 ubiquitin-protein ligase CCNB1IP1-like isoform X1. (285 aa)
	F6VA91_CIOIN	Uncharacterized protein. (126 aa)
	LOC100185848	Deacetylase sirtuin-type domain-containing protein. (357 aa)
	F7B169_CIOIN	MutL_C domain-containing protein. (252 aa)
	F7B162_CIOIN	Uncharacterized protein. (208 aa)
	F6TDQ4_CIOIN	Ubiquitin-like domain-containing protein. (251 aa)
	F6XA18_CIOIN	PWWP domain-containing protein. (177 aa)
	H2XT98_CIOIN	RECA_2 domain-containing protein. (265 aa)
	LOC100185988	Homologous-pairing protein 2 homolog. (210 aa)
	H2XV86_CIOIN	DNA_MISMATCH_REPAIR_2 domain-containing protein. (290 aa)
	H2XY62_CIOIN	AAA domain-containing protein; Belongs to the AAA ATPase family. (424 aa)
	H2XYN9_CIOIN	Uncharacterized protein. (255 aa)
	H2Y2T2_CIOIN	FAT domain-containing protein. (235 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6R213_CIOIN	F6RJ65_CIOIN	ENSCINP00000018395	ENSCINP00000001490	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.514
F6R213_CIOIN	H2XT98_CIOIN	ENSCINP00000018395	ENSCINP00000032882	Uncharacterized protein.	RECA_2 domain-containing protein.	0.505
F6R213_CIOIN	H2Y2T2_CIOIN	ENSCINP00000018395	ENSCINP00000036217	Uncharacterized protein.	FAT domain-containing protein.	0.514
F6R213_CIOIN	LOC100182748	ENSCINP00000018395	ENSCINP00000005229	Uncharacterized protein.	DNA_mis_repair domain-containing protein.	0.590
F6RJ65_CIOIN	F6R213_CIOIN	ENSCINP00000001490	ENSCINP00000018395	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.514
F6RJ65_CIOIN	F6YKR1_CIOIN	ENSCINP00000001490	ENSCINP00000003059	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	DNA_MISMATCH_REPAIR_2 domain-containing protein.	0.455
F6RJ65_CIOIN	H2XT98_CIOIN	ENSCINP00000001490	ENSCINP00000032882	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	RECA_2 domain-containing protein.	0.595
F6RJ65_CIOIN	H2XV86_CIOIN	ENSCINP00000001490	ENSCINP00000033570	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	DNA_MISMATCH_REPAIR_2 domain-containing protein.	0.400
F6RJ65_CIOIN	H2Y2T2_CIOIN	ENSCINP00000001490	ENSCINP00000036217	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	FAT domain-containing protein.	0.949
F6RJ65_CIOIN	LOC100180409	ENSCINP00000001490	ENSCINP00000009041	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Meiotic recombination protein SPO11.	0.496
F6RJ65_CIOIN	LOC100182748	ENSCINP00000001490	ENSCINP00000005229	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	DNA_mis_repair domain-containing protein.	0.652
F6RJ65_CIOIN	LOC100182917	ENSCINP00000001490	ENSCINP00000004919	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.400
F6VA91_CIOIN	LOC100176076	ENSCINP00000022570	ENSCINP00000012841	Uncharacterized protein.	Uncharacterized protein LOC100176076.	0.409
F6YKR1_CIOIN	F6RJ65_CIOIN	ENSCINP00000003059	ENSCINP00000001490	DNA_MISMATCH_REPAIR_2 domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.455
F6YKR1_CIOIN	F7B162_CIOIN	ENSCINP00000003059	ENSCINP00000024776	DNA_MISMATCH_REPAIR_2 domain-containing protein.	Uncharacterized protein.	0.886
F6YKR1_CIOIN	F7B169_CIOIN	ENSCINP00000003059	ENSCINP00000024775	DNA_MISMATCH_REPAIR_2 domain-containing protein.	MutL_C domain-containing protein.	0.801
F6YKR1_CIOIN	H2XT98_CIOIN	ENSCINP00000003059	ENSCINP00000032882	DNA_MISMATCH_REPAIR_2 domain-containing protein.	RECA_2 domain-containing protein.	0.552
F6YKR1_CIOIN	H2XV86_CIOIN	ENSCINP00000003059	ENSCINP00000033570	DNA_MISMATCH_REPAIR_2 domain-containing protein.	DNA_MISMATCH_REPAIR_2 domain-containing protein.	0.944
F6YKR1_CIOIN	H2Y2T2_CIOIN	ENSCINP00000003059	ENSCINP00000036217	DNA_MISMATCH_REPAIR_2 domain-containing protein.	FAT domain-containing protein.	0.455
F6YKR1_CIOIN	LOC100176076	ENSCINP00000003059	ENSCINP00000012841	DNA_MISMATCH_REPAIR_2 domain-containing protein.	Uncharacterized protein LOC100176076.	0.446