(34 nodes) Maintenance of protein location network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100181289	Cyclin-dependent-like kinase 5; Belongs to the protein kinase superfamily. (292 aa)
	LOC100177564	Uncharacterized protein. (181 aa)
	F6W2R0_CIOIN	Uncharacterized protein. (249 aa)
	F6UE50_CIOIN	BTP domain-containing protein. (671 aa)
	F6WU40_CIOIN	Ricin B-type lectin domain-containing protein. (789 aa)
	F6W826_CIOIN	VPS13 domain-containing protein. (392 aa)
	LOC100178216	Protein RER1; Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment. (188 aa)
	LOC100183552	ANK_REP_REGION domain-containing protein. (230 aa)
	LOC100183100	Uncharacterized protein LOC100183100. (202 aa)
	F6SWB6_CIOIN	ANK_REP_REGION domain-containing protein. (457 aa)
	LOC100181381	UBX domain-containing protein. (367 aa)
	F6Z6K5_CIOIN	Suppressor of fused homolog. (473 aa)
	erd2	ER lumen protein-retaining receptor. (212 aa)
	F6WCT6_CIOIN	PDZ domain-containing protein. (347 aa)
	F6PK54_CIOIN	Uncharacterized protein. (331 aa)
	F6WBK6_CIOIN	TPR_REGION domain-containing protein. (446 aa)
	LOC100186609	Uncharacterized protein; Belongs to the heat shock protein 70 family. (671 aa)
	LOC101242470	Uncharacterized protein; Belongs to the heat shock protein 70 family. (659 aa)
	F6V4V0_CIOIN	Sortilin. (1459 aa)
	zf(u1like)-11	Matrin-type domain-containing protein. (640 aa)
	Creb/atf-b	BZIP domain-containing protein. (542 aa)
	LOC100177760	FAS-associated factor 1-like. (168 aa)
	H2XKT6_CIOIN	SHR-BD domain-containing protein. (301 aa)
	LOC100181200	Profilin; Belongs to the profilin family. (151 aa)
	H2XN19_CIOIN	ARL2_Bind_BART domain-containing protein. (156 aa)
	H2XP75_CIOIN	Uncharacterized protein. (257 aa)
	H2XQB7_CIOIN	PHD-type domain-containing protein. (164 aa)
	LOC100178355	ADP-ribosylation factor-like protein 2; Belongs to the small GTPase superfamily. Arf family. (184 aa)
	H2XTB6_CIOIN	Uncharacterized protein. (412 aa)
	H2XWL1_CIOIN	Uncharacterized protein. (149 aa)
	H2XWN2_CIOIN	ER lumen protein-retaining receptor. (206 aa)
	H2XYZ9_CIOIN	Uncharacterized protein. (41 aa)
	H2XZB2_CIOIN	VPS13_C domain-containing protein. (187 aa)
	H2Y0K6_CIOIN	Uncharacterized protein. (3252 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6UE50_CIOIN	H2XQB7_CIOIN	ENSCINP00000005505	ENSCINP00000031851	BTP domain-containing protein.	PHD-type domain-containing protein.	0.540
F6WU40_CIOIN	H2XKT6_CIOIN	ENSCINP00000007676	ENSCINP00000030268	Ricin B-type lectin domain-containing protein.	SHR-BD domain-containing protein.	0.948
F6WU40_CIOIN	H2XP75_CIOIN	ENSCINP00000007676	ENSCINP00000031458	Ricin B-type lectin domain-containing protein.	Uncharacterized protein.	0.940
H2XKT6_CIOIN	F6WU40_CIOIN	ENSCINP00000030268	ENSCINP00000007676	SHR-BD domain-containing protein.	Ricin B-type lectin domain-containing protein.	0.948
H2XKT6_CIOIN	H2XP75_CIOIN	ENSCINP00000030268	ENSCINP00000031458	SHR-BD domain-containing protein.	Uncharacterized protein.	0.943
H2XN19_CIOIN	LOC100178355	ENSCINP00000031052	ENSCINP00000032218	ARL2_Bind_BART domain-containing protein.	ADP-ribosylation factor-like protein 2; Belongs to the small GTPase superfamily. Arf family.	0.966
H2XP75_CIOIN	F6WU40_CIOIN	ENSCINP00000031458	ENSCINP00000007676	Uncharacterized protein.	Ricin B-type lectin domain-containing protein.	0.940
H2XP75_CIOIN	H2XKT6_CIOIN	ENSCINP00000031458	ENSCINP00000030268	Uncharacterized protein.	SHR-BD domain-containing protein.	0.943
H2XQB7_CIOIN	F6UE50_CIOIN	ENSCINP00000031851	ENSCINP00000005505	PHD-type domain-containing protein.	BTP domain-containing protein.	0.540
H2XWN2_CIOIN	LOC100178216	ENSCINP00000034066	ENSCINP00000011250	ER lumen protein-retaining receptor.	Protein RER1; Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.	0.489
LOC100178216	H2XWN2_CIOIN	ENSCINP00000011250	ENSCINP00000034066	Protein RER1; Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.	ER lumen protein-retaining receptor.	0.489
LOC100178216	erd2	ENSCINP00000011250	ENSCINP00000016854	Protein RER1; Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.	ER lumen protein-retaining receptor.	0.490
LOC100178355	H2XN19_CIOIN	ENSCINP00000032218	ENSCINP00000031052	ADP-ribosylation factor-like protein 2; Belongs to the small GTPase superfamily. Arf family.	ARL2_Bind_BART domain-containing protein.	0.966
LOC100186609	LOC101242470	ENSCINP00000019205	ENSCINP00000019494	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein; Belongs to the heat shock protein 70 family.	0.901
LOC101242470	LOC100186609	ENSCINP00000019494	ENSCINP00000019205	Uncharacterized protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein; Belongs to the heat shock protein 70 family.	0.901
erd2	LOC100178216	ENSCINP00000016854	ENSCINP00000011250	ER lumen protein-retaining receptor.	Protein RER1; Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.	0.490