(17 nodes) Cadherin binding network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ci-cadherin	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins. (798 aa)
	F6Y9W9_CIOIN	Uncharacterized protein. (647 aa)
	Cibeta-catenin	Uncharacterized protein. (497 aa)
	F7AM82_CIOIN	Uncharacterized protein. (212 aa)
	F6Q5K0_CIOIN	Uncharacterized protein. (899 aa)
	LOC100178377	Catenin delta-1 isoform X1. (869 aa)
	F7AWV5_CIOIN	Ubiquitin-like domain-containing protein. (250 aa)
	LOC100180700	Thioredoxin domain-containing protein 9-like. (219 aa)
	F6TZA7_CIOIN	Uncharacterized protein. (273 aa)
	LOC100176864	Glyoxalase domain-containing protein 4-like isoform X2. (296 aa)
	F6X2R6_CIOIN	Uncharacterized protein. (207 aa)
	H2XKU5_CIOIN	Uncharacterized protein. (147 aa)
	F6QJI6_CIOIN	Uncharacterized protein. (244 aa)
	F6XHP5_CIOIN	Uncharacterized protein. (468 aa)
	LOC100182764	Charged multivesicular body protein 5. (217 aa)
	Numb	PID domain-containing protein. (430 aa)
	F6PV66_CIOIN	PH domain-containing protein. (661 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cibeta-catenin	F6Q5K0_CIOIN	ENSCINP00000014417	ENSCINP00000018199	Uncharacterized protein.	Uncharacterized protein.	0.967
Cibeta-catenin	F6TZA7_CIOIN	ENSCINP00000014417	ENSCINP00000025972	Uncharacterized protein.	Uncharacterized protein.	0.963
Cibeta-catenin	F6XHP5_CIOIN	ENSCINP00000014417	ENSCINP00000007634	Uncharacterized protein.	Uncharacterized protein.	0.700
Cibeta-catenin	F6Y9W9_CIOIN	ENSCINP00000014417	ENSCINP00000014198	Uncharacterized protein.	Uncharacterized protein.	0.642
Cibeta-catenin	H2XKU5_CIOIN	ENSCINP00000014417	ENSCINP00000030277	Uncharacterized protein.	Uncharacterized protein.	0.692
Cibeta-catenin	LOC100178377	ENSCINP00000014417	ENSCINP00000019142	Uncharacterized protein.	Catenin delta-1 isoform X1.	0.692
Cibeta-catenin	ci-cadherin	ENSCINP00000014417	ENSCINP00000013407	Uncharacterized protein.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.912
F6Q5K0_CIOIN	Cibeta-catenin	ENSCINP00000018199	ENSCINP00000014417	Uncharacterized protein.	Uncharacterized protein.	0.967
F6Q5K0_CIOIN	F6TZA7_CIOIN	ENSCINP00000018199	ENSCINP00000025972	Uncharacterized protein.	Uncharacterized protein.	0.967
F6Q5K0_CIOIN	F6XHP5_CIOIN	ENSCINP00000018199	ENSCINP00000007634	Uncharacterized protein.	Uncharacterized protein.	0.723
F6Q5K0_CIOIN	H2XKU5_CIOIN	ENSCINP00000018199	ENSCINP00000030277	Uncharacterized protein.	Uncharacterized protein.	0.875
F6Q5K0_CIOIN	LOC100178377	ENSCINP00000018199	ENSCINP00000019142	Uncharacterized protein.	Catenin delta-1 isoform X1.	0.875
F6Q5K0_CIOIN	ci-cadherin	ENSCINP00000018199	ENSCINP00000013407	Uncharacterized protein.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.840
F6TZA7_CIOIN	Cibeta-catenin	ENSCINP00000025972	ENSCINP00000014417	Uncharacterized protein.	Uncharacterized protein.	0.963
F6TZA7_CIOIN	F6Q5K0_CIOIN	ENSCINP00000025972	ENSCINP00000018199	Uncharacterized protein.	Uncharacterized protein.	0.967
F6TZA7_CIOIN	F6XHP5_CIOIN	ENSCINP00000025972	ENSCINP00000007634	Uncharacterized protein.	Uncharacterized protein.	0.700
F6TZA7_CIOIN	F6Y9W9_CIOIN	ENSCINP00000025972	ENSCINP00000014198	Uncharacterized protein.	Uncharacterized protein.	0.642
F6TZA7_CIOIN	H2XKU5_CIOIN	ENSCINP00000025972	ENSCINP00000030277	Uncharacterized protein.	Uncharacterized protein.	0.692
F6TZA7_CIOIN	LOC100178377	ENSCINP00000025972	ENSCINP00000019142	Uncharacterized protein.	Catenin delta-1 isoform X1.	0.692
F6TZA7_CIOIN	ci-cadherin	ENSCINP00000025972	ENSCINP00000013407	Uncharacterized protein.	Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.	0.863