(60 nodes) Positive regulation of DNA repair network (Ciona intestinalis)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2Y0L0_CIOIN	FAT domain-containing protein. (303 aa)
	LOC100183893	Uncharacterized protein. (480 aa)
	H2Y3M4_CIOIN	Uncharacterized protein. (185 aa)
	H2Y3C6_CIOIN	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (540 aa)
	H2Y2Q0_CIOIN	FATC domain-containing protein; Belongs to the PI3/PI4-kinase family. (450 aa)
	H2Y1A0_CIOIN	Uncharacterized protein. (345 aa)
	H2XXZ3_CIOIN	Uncharacterized protein. (870 aa)
	H2XXR3_CIOIN	Poly [ADP-ribose] polymerase. (472 aa)
	H2XW16_CIOIN	Actin-related protein 2; ATP-binding component of the Arp2/3 complex, a multiprotein complex that mediates actin polymerization upon stimulation by nucleation-promoting factor (NPF). The Arp2/3 complex mediates the formation of branched actin networks in the cytoplasm, providing the force for cell motility. Seems to contact the pointed end of the daughter actin filament. (216 aa)
	H2XR99_CIOIN	FHA domain-containing protein. (427 aa)
	H2XNP0_CIOIN	Uncharacterized protein. (243 aa)
	H2XNN7_CIOIN	Uncharacterized protein. (112 aa)
	H2XLY1_CIOIN	Uncharacterized protein. (292 aa)
	H2XKV9_CIOIN	DNA_binding_1 domain-containing protein. (180 aa)
	H2XJH5_CIOIN	ANK_REP_REGION domain-containing protein. (95 aa)
	F6VQG0_CIOIN	Uncharacterized protein. (160 aa)
	F6X0L7_CIOIN	FHA_2 domain-containing protein. (571 aa)
	zf(ring)-23	RING-type domain-containing protein. (319 aa)
	nfrkb	Uncharacterized protein. (310 aa)
	F6SLD6_CIOIN	Deacetylase sirtuin-type domain-containing protein. (737 aa)
	F6XA18_CIOIN	PWWP domain-containing protein. (177 aa)
	LOC100183508	MRG/MORF4L-binding protein-like. (148 aa)
	tcfl1	Ci-TCFL1 protein. (333 aa)
	LOC100178594	Fructose-2,6-bisphosphatase TIGAR-like. (261 aa)
	F6PU76_CIOIN	Enhancer of polycomb-like protein. (402 aa)
	F6WQK5_CIOIN	BZIP domain-containing protein. (182 aa)
	F7A9P4_CIOIN	NUC194 domain-containing protein. (726 aa)
	F6UXY9_CIOIN	ARID domain-containing protein. (428 aa)
	Ci-ZF(PARP)-3	Zinc finger protein. (565 aa)
	F6WWY7_CIOIN	KIND domain-containing protein. (615 aa)
	ckn1	Cockayne syndrome 1 homolog. (403 aa)
	F6PHR7_CIOIN	Uncharacterized protein. (228 aa)
	LOC100186474	Uncharacterized protein LOC100186474 isoform X1. (164 aa)
	LOC100180348	B-cell CLL/lymphoma 7 protein family member B-like. (167 aa)
	foxm	Fork-head domain-containing protein. (916 aa)
	F6UD40_CIOIN	Eyes absent homolog; Belongs to the HAD-like hydrolase superfamily. EYA family. (434 aa)
	F6Z761_CIOIN	Uncharacterized protein. (470 aa)
	F6X3A4_CIOIN	Uncharacterized protein. (594 aa)
	F6X3C5_CIOIN	HA2 domain-containing protein. (413 aa)
	F7B7U2_CIOIN	Bromo domain-containing protein. (440 aa)
	F6VEQ7_CIOIN	RFX-type winged-helix domain-containing protein. (624 aa)
	F6QSJ0_CIOIN	Uncharacterized protein. (453 aa)
	F6PXA9_CIOIN	Uncharacterized protein. (804 aa)
	LOC100185398	Actin-like protein 6B; Belongs to the actin family. (423 aa)
	LOC100176033	KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family. (263 aa)
	F6R982_CIOIN	WD_REPEATS_REGION domain-containing protein. (433 aa)
	LOC100177411	RuvB-like helicase; Belongs to the RuvB family. (467 aa)
	F6WPB7_CIOIN	BRCC36_C domain-containing protein. (108 aa)
	F7AUL7_CIOIN	Uncharacterized protein. (989 aa)
	F6TSV6_CIOIN	WD_REPEATS_REGION domain-containing protein. (687 aa)
	F6YH93_CIOIN	Uncharacterized protein. (1111 aa)
	F6YT81_CIOIN	Uncharacterized protein. (157 aa)
	F6SQ79_CIOIN	RING-type domain-containing protein. (190 aa)
	F6SQA2_CIOIN	DTC domain-containing protein. (81 aa)
	F6SQE1_CIOIN	Uncharacterized protein. (651 aa)
	F6W7J0_CIOIN	Uncharacterized protein. (224 aa)
	Sir2-d	Deacetylase sirtuin-type domain-containing protein. (91 aa)
	LOC100175935	Ubiquitin carboxyl-terminal hydrolase. (328 aa)
	F6RL41_CIOIN	FAT domain-containing protein. (2944 aa)
	F6RSF3_CIOIN	SET domain-containing protein. (227 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ci-ZF(PARP)-3	F6YH93_CIOIN	ENSCINP00000019848	ENSCINP00000008456	Zinc finger protein.	Uncharacterized protein.	0.650
Ci-ZF(PARP)-3	F7A9P4_CIOIN	ENSCINP00000019848	ENSCINP00000023638	Zinc finger protein.	NUC194 domain-containing protein.	0.432
Ci-ZF(PARP)-3	H2XXR3_CIOIN	ENSCINP00000019848	ENSCINP00000034447	Zinc finger protein.	Poly [ADP-ribose] polymerase.	0.875
Ci-ZF(PARP)-3	H2Y3C6_CIOIN	ENSCINP00000019848	ENSCINP00000036411	Zinc finger protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.432
Ci-ZF(PARP)-3	LOC100183893	ENSCINP00000019848	ENSCINP00000036521	Zinc finger protein.	Uncharacterized protein.	0.702
F6PHR7_CIOIN	F6PU76_CIOIN	ENSCINP00000018266	ENSCINP00000023865	Uncharacterized protein.	Enhancer of polycomb-like protein.	0.978
F6PHR7_CIOIN	F6RL41_CIOIN	ENSCINP00000018266	ENSCINP00000001174	Uncharacterized protein.	FAT domain-containing protein.	0.732
F6PHR7_CIOIN	F7B7U2_CIOIN	ENSCINP00000018266	ENSCINP00000015259	Uncharacterized protein.	Bromo domain-containing protein.	0.916
F6PHR7_CIOIN	H2XR99_CIOIN	ENSCINP00000018266	ENSCINP00000032183	Uncharacterized protein.	FHA domain-containing protein.	0.559
F6PHR7_CIOIN	H2Y0L0_CIOIN	ENSCINP00000018266	ENSCINP00000035444	Uncharacterized protein.	FAT domain-containing protein.	0.871
F6PHR7_CIOIN	H2Y2Q0_CIOIN	ENSCINP00000018266	ENSCINP00000036185	Uncharacterized protein.	FATC domain-containing protein; Belongs to the PI3/PI4-kinase family.	0.871
F6PHR7_CIOIN	LOC100177411	ENSCINP00000018266	ENSCINP00000009659	Uncharacterized protein.	RuvB-like helicase; Belongs to the RuvB family.	0.964
F6PHR7_CIOIN	LOC100183508	ENSCINP00000018266	ENSCINP00000026941	Uncharacterized protein.	MRG/MORF4L-binding protein-like.	0.918
F6PHR7_CIOIN	LOC100185398	ENSCINP00000018266	ENSCINP00000010732	Uncharacterized protein.	Actin-like protein 6B; Belongs to the actin family.	0.958
F6PHR7_CIOIN	tcfl1	ENSCINP00000018266	ENSCINP00000026106	Uncharacterized protein.	Ci-TCFL1 protein.	0.946
F6PU76_CIOIN	F6PHR7_CIOIN	ENSCINP00000023865	ENSCINP00000018266	Enhancer of polycomb-like protein.	Uncharacterized protein.	0.978
F6PU76_CIOIN	F6RL41_CIOIN	ENSCINP00000023865	ENSCINP00000001174	Enhancer of polycomb-like protein.	FAT domain-containing protein.	0.839
F6PU76_CIOIN	F7B7U2_CIOIN	ENSCINP00000023865	ENSCINP00000015259	Enhancer of polycomb-like protein.	Bromo domain-containing protein.	0.851
F6PU76_CIOIN	H2XR99_CIOIN	ENSCINP00000023865	ENSCINP00000032183	Enhancer of polycomb-like protein.	FHA domain-containing protein.	0.540
F6PU76_CIOIN	H2Y0L0_CIOIN	ENSCINP00000023865	ENSCINP00000035444	Enhancer of polycomb-like protein.	FAT domain-containing protein.	0.923