(16 nodes) Positive regulation of DNA replication network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6PL57_CIOIN	Uncharacterized protein. (1087 aa)
	F6WJV4_CIOIN	Uncharacterized protein. (879 aa)
	F6VYS8_CIOIN	Uncharacterized protein. (445 aa)
	F6USX3_CIOIN	Uncharacterized protein. (983 aa)
	LOC100176493	AAA domain-containing protein. (844 aa)
	LOC100181381	UBX domain-containing protein. (367 aa)
	Mapkk4	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (475 aa)
	F6X3C5_CIOIN	HA2 domain-containing protein. (413 aa)
	F6X3A4_CIOIN	Uncharacterized protein. (594 aa)
	F6WCV2_CIOIN	Protein kinase domain-containing protein. (510 aa)
	F6XKQ1_CIOIN	PHB domain-containing protein. (351 aa)
	zf(u1like)-11	Matrin-type domain-containing protein. (640 aa)
	F6XM19_CIOIN	Uncharacterized protein. (446 aa)
	LOC100177760	FAS-associated factor 1-like. (168 aa)
	H2XJT4_CIOIN	PHD-type domain-containing protein. (508 aa)
	LOC100184078	CDT1 domain-containing protein. (407 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6USX3_CIOIN	LOC100176493	ENSCINP00000011520	ENSCINP00000014754	Uncharacterized protein.	AAA domain-containing protein.	0.792
F6USX3_CIOIN	LOC100184078	ENSCINP00000011520	ENSCINP00000033367	Uncharacterized protein.	CDT1 domain-containing protein.	0.502
F6VYS8_CIOIN	F6WJV4_CIOIN	ENSCINP00000010541	ENSCINP00000010535	Uncharacterized protein.	Uncharacterized protein.	0.900
F6WCV2_CIOIN	LOC100184078	ENSCINP00000017765	ENSCINP00000033367	Protein kinase domain-containing protein.	CDT1 domain-containing protein.	0.855
F6WJV4_CIOIN	F6VYS8_CIOIN	ENSCINP00000010535	ENSCINP00000010541	Uncharacterized protein.	Uncharacterized protein.	0.900
F6X3A4_CIOIN	F6X3C5_CIOIN	ENSCINP00000015974	ENSCINP00000015971	Uncharacterized protein.	HA2 domain-containing protein.	0.944
F6X3C5_CIOIN	F6X3A4_CIOIN	ENSCINP00000015971	ENSCINP00000015974	HA2 domain-containing protein.	Uncharacterized protein.	0.944
LOC100176493	F6USX3_CIOIN	ENSCINP00000014754	ENSCINP00000011520	AAA domain-containing protein.	Uncharacterized protein.	0.792
LOC100176493	LOC100184078	ENSCINP00000014754	ENSCINP00000033367	AAA domain-containing protein.	CDT1 domain-containing protein.	0.725
LOC100184078	F6USX3_CIOIN	ENSCINP00000033367	ENSCINP00000011520	CDT1 domain-containing protein.	Uncharacterized protein.	0.502
LOC100184078	F6WCV2_CIOIN	ENSCINP00000033367	ENSCINP00000017765	CDT1 domain-containing protein.	Protein kinase domain-containing protein.	0.855
LOC100184078	LOC100176493	ENSCINP00000033367	ENSCINP00000014754	CDT1 domain-containing protein.	AAA domain-containing protein.	0.725