(33 nodes) Regulation of embryonic development network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	zf(zz)-1	Zinc finger protein 1. (1039 aa)
	LOC100179473	Guanine nucleotide-binding protein subunit beta-2-like 1. (323 aa)
	LOC100177411	RuvB-like helicase; Belongs to the RuvB family. (467 aa)
	LOC100176802	Uncharacterized protein. (3767 aa)
	sfrp2	Secreted frizzled-related protein isoform X1. (293 aa)
	F6PV66_CIOIN	PH domain-containing protein. (661 aa)
	H2Y0L1_CIOIN	CAP10 domain-containing protein. (242 aa)
	LOC100176126	Ras-related protein Rab-14. (214 aa)
	LOC100186846	YEATS domain-containing protein 2. (960 aa)
	F6SUC9_CIOIN	Uncharacterized protein. (1841 aa)
	F6WRI9_CIOIN	HECT domain-containing protein. (533 aa)
	F6RU68_CIOIN	N-acetyltransferase domain-containing protein. (702 aa)
	LOC100186474	Uncharacterized protein LOC100186474 isoform X1. (164 aa)
	F6YM26_CIOIN	Uncharacterized protein. (155 aa)
	F6Z402_CIOIN	Peptidase S72 domain-containing protein. (410 aa)
	LOC100183902	Centriole, cilia and spindle-associated protein. (246 aa)
	Q4H307_CIOIN	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (249 aa)
	F6V8F4_CIOIN	Uncharacterized protein. (215 aa)
	F6RG39_CIOIN	SGF29 C-terminal domain-containing protein. (293 aa)
	F6TDQ4_CIOIN	Ubiquitin-like domain-containing protein. (251 aa)
	nfrkb	Uncharacterized protein. (310 aa)
	LOC100182357	MAP3K12-binding inhibitory protein 1. (281 aa)
	H2XLP4_CIOIN	Uncharacterized protein. (455 aa)
	H2XPT0_CIOIN	Uncharacterized protein. (114 aa)
	H2XQ41_CIOIN	UDG domain-containing protein. (250 aa)
	H2XR04_CIOIN	CBFD_NFYB_HMF domain-containing protein. (145 aa)
	H2XR99_CIOIN	FHA domain-containing protein. (427 aa)
	H2XY73_CIOIN	CAP10 domain-containing protein. (119 aa)
	H2XZG0_CIOIN	Uncharacterized protein. (740 aa)
	F6SGK0_CIOIN	Tyrosine-protein kinase. (954 aa)
	LOC100175935	Ubiquitin carboxyl-terminal hydrolase. (328 aa)
	F6W6K0_CIOIN	Uncharacterized protein. (534 aa)
	LOC778720	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (510 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6RG39_CIOIN	F6RU68_CIOIN	ENSCINP00000023962	ENSCINP00000016783	SGF29 C-terminal domain-containing protein.	N-acetyltransferase domain-containing protein.	0.990
F6RG39_CIOIN	H2XR04_CIOIN	ENSCINP00000023962	ENSCINP00000032088	SGF29 C-terminal domain-containing protein.	CBFD_NFYB_HMF domain-containing protein.	0.721
F6RG39_CIOIN	LOC100182357	ENSCINP00000023962	ENSCINP00000030172	SGF29 C-terminal domain-containing protein.	MAP3K12-binding inhibitory protein 1.	0.696
F6RG39_CIOIN	LOC100186846	ENSCINP00000023962	ENSCINP00000014709	SGF29 C-terminal domain-containing protein.	YEATS domain-containing protein 2.	0.905
F6RG39_CIOIN	zf(zz)-1	ENSCINP00000023962	ENSCINP00000005056	SGF29 C-terminal domain-containing protein.	Zinc finger protein 1.	0.989
F6RU68_CIOIN	F6RG39_CIOIN	ENSCINP00000016783	ENSCINP00000023962	N-acetyltransferase domain-containing protein.	SGF29 C-terminal domain-containing protein.	0.990
F6RU68_CIOIN	H2XR04_CIOIN	ENSCINP00000016783	ENSCINP00000032088	N-acetyltransferase domain-containing protein.	CBFD_NFYB_HMF domain-containing protein.	0.843
F6RU68_CIOIN	LOC100182357	ENSCINP00000016783	ENSCINP00000030172	N-acetyltransferase domain-containing protein.	MAP3K12-binding inhibitory protein 1.	0.674
F6RU68_CIOIN	LOC100186846	ENSCINP00000016783	ENSCINP00000014709	N-acetyltransferase domain-containing protein.	YEATS domain-containing protein 2.	0.929
F6RU68_CIOIN	zf(zz)-1	ENSCINP00000016783	ENSCINP00000005056	N-acetyltransferase domain-containing protein.	Zinc finger protein 1.	0.927
F6SUC9_CIOIN	F6Z402_CIOIN	ENSCINP00000016161	ENSCINP00000018986	Uncharacterized protein.	Peptidase S72 domain-containing protein.	0.970
F6V8F4_CIOIN	F6YM26_CIOIN	ENSCINP00000022816	ENSCINP00000018681	Uncharacterized protein.	Uncharacterized protein.	0.456
F6WRI9_CIOIN	H2XLP4_CIOIN	ENSCINP00000016316	ENSCINP00000030576	HECT domain-containing protein.	Uncharacterized protein.	0.925
F6WRI9_CIOIN	H2XPT0_CIOIN	ENSCINP00000016316	ENSCINP00000031664	HECT domain-containing protein.	Uncharacterized protein.	0.410
F6YM26_CIOIN	F6V8F4_CIOIN	ENSCINP00000018681	ENSCINP00000022816	Uncharacterized protein.	Uncharacterized protein.	0.456
F6Z402_CIOIN	F6SUC9_CIOIN	ENSCINP00000018986	ENSCINP00000016161	Peptidase S72 domain-containing protein.	Uncharacterized protein.	0.970
F6Z402_CIOIN	LOC100176802	ENSCINP00000018986	ENSCINP00000010645	Peptidase S72 domain-containing protein.	Uncharacterized protein.	0.945
H2XLP4_CIOIN	F6WRI9_CIOIN	ENSCINP00000030576	ENSCINP00000016316	Uncharacterized protein.	HECT domain-containing protein.	0.925
H2XLP4_CIOIN	H2XPT0_CIOIN	ENSCINP00000030576	ENSCINP00000031664	Uncharacterized protein.	Uncharacterized protein.	0.461
H2XPT0_CIOIN	F6WRI9_CIOIN	ENSCINP00000031664	ENSCINP00000016316	Uncharacterized protein.	HECT domain-containing protein.	0.410