STRINGSTRING
LOC100185985 LOC100185985 F6RQ60_CIOIN F6RQ60_CIOIN F6YB82_CIOIN F6YB82_CIOIN F6Z0E6_CIOIN F6Z0E6_CIOIN F7AIB9_CIOIN F7AIB9_CIOIN H2XJJ8_CIOIN H2XJJ8_CIOIN H2XNI6_CIOIN H2XNI6_CIOIN H2XNR5_CIOIN H2XNR5_CIOIN H2XP13_CIOIN H2XP13_CIOIN H2XP93_CIOIN H2XP93_CIOIN LOC100187414 LOC100187414 LOC104266248 LOC104266248 H2XQH7_CIOIN H2XQH7_CIOIN LOC100186689 LOC100186689 H2XX28_CIOIN H2XX28_CIOIN LOC100184713 LOC100184713 H2Y0K5_CIOIN H2Y0K5_CIOIN H2Y1H5_CIOIN H2Y1H5_CIOIN H2Y1Q5_CIOIN H2Y1Q5_CIOIN zf(cchc)-24 zf(cchc)-24 LOC100175452 LOC100175452 Cimsi Cimsi LOC100182475 LOC100182475 F6XS97_CIOIN F6XS97_CIOIN LOC100177970 LOC100177970 F6TEH9_CIOIN F6TEH9_CIOIN F6WTG3_CIOIN F6WTG3_CIOIN LOC100180093 LOC100180093 F6Q753_CIOIN F6Q753_CIOIN LOC100175198 LOC100175198 F6TIY7_CIOIN F6TIY7_CIOIN cirgg1 cirgg1 F6UHH9_CIOIN F6UHH9_CIOIN LOC100185146 LOC100185146 Zf(cchc)-13 Zf(cchc)-13 F6RKQ2_CIOIN F6RKQ2_CIOIN F6ZBX8_CIOIN F6ZBX8_CIOIN LOC100176171 LOC100176171 F6XF93_CIOIN F6XF93_CIOIN F7AAE8_CIOIN F7AAE8_CIOIN LOC100183284 LOC100183284 F6UF46_CIOIN F6UF46_CIOIN rgc rgc LOC100187236 LOC100187236 F6TQ55_CIOIN F6TQ55_CIOIN LOC104265829 LOC104265829 F6ZM80_CIOIN F6ZM80_CIOIN F6X986_CIOIN F6X986_CIOIN F6U5S2_CIOIN F6U5S2_CIOIN F6YF53_CIOIN F6YF53_CIOIN Zf(c3h)-11 Zf(c3h)-11 F6QGB1_CIOIN F6QGB1_CIOIN
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC100185985RNA binding protein fox-1 homolog 3 isoform X8. (448 aa)
F6RQ60_CIOINSURP motif domain-containing protein. (228 aa)
F6YB82_CIOINUncharacterized protein. (251 aa)
F6Z0E6_CIOINKH domain-containing protein. (136 aa)
F7AIB9_CIOINUncharacterized protein. (271 aa)
H2XJJ8_CIOINRRM domain-containing protein. (229 aa)
H2XNI6_CIOINUncharacterized protein. (477 aa)
H2XNR5_CIOINUncharacterized protein. (112 aa)
H2XP13_CIOINUncharacterized protein. (549 aa)
H2XP93_CIOINUncharacterized protein. (379 aa)
LOC100187414RNA-binding protein 39-like. (465 aa)
LOC104266248Uncharacterized protein. (162 aa)
H2XQH7_CIOINRRM domain-containing protein. (283 aa)
LOC100186689PWI domain-containing protein. (159 aa)
H2XX28_CIOINRRM domain-containing protein. (201 aa)
LOC100184713Serine/arginine-rich splicing factor 12 isoform X1. (227 aa)
H2Y0K5_CIOINUncharacterized protein. (173 aa)
H2Y1H5_CIOINRRM domain-containing protein. (170 aa)
H2Y1Q5_CIOINSAP domain-containing protein. (353 aa)
zf(cchc)-24Serine/arginine-rich splicing factor 7. (230 aa)
LOC100175452U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (482 aa)
CimsiUncharacterized protein. (393 aa)
LOC100182475Uncharacterized protein. (764 aa)
F6XS97_CIOINUncharacterized protein. (760 aa)
LOC100177970Splicing factor 3B subunit 4-like. (375 aa)
F6TEH9_CIOINRRM domain-containing protein. (147 aa)
F6WTG3_CIOINUncharacterized protein. (473 aa)
LOC100180093WD40 repeat-containing protein SMU1. (513 aa)
F6Q753_CIOINUncharacterized protein. (486 aa)
LOC100175198Zinc finger CCCH domain-containing protein 10 isoform X2. (672 aa)
F6TIY7_CIOINUncharacterized protein. (479 aa)
cirgg1Uncharacterized protein. (436 aa)
F6UHH9_CIOINUncharacterized protein; Belongs to the DEAD box helicase family. (572 aa)
LOC100185146RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (164 aa)
Zf(cchc)-13CCHC-type domain-containing protein. (494 aa)
F6RKQ2_CIOINUncharacterized protein. (437 aa)
F6ZBX8_CIOINUncharacterized protein. (405 aa)
LOC100176171Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6-A. (389 aa)
F6XF93_CIOINUncharacterized protein. (410 aa)
F7AAE8_CIOINRRM domain-containing protein. (737 aa)
LOC100183284SKIP_SNW domain-containing protein. (534 aa)
F6UF46_CIOINUncharacterized protein. (494 aa)
rgcRRM domain-containing protein. (159 aa)
LOC100187236Uncharacterized protein. (468 aa)
F6TQ55_CIOINDUF2040 domain-containing protein. (415 aa)
LOC104265829DEAD-box ATP-dependent RNA helicase 20-like; Belongs to the DEAD box helicase family. (573 aa)
F6ZM80_CIOINUncharacterized protein. (382 aa)
F6X986_CIOINRRM domain-containing protein. (149 aa)
F6U5S2_CIOINKH domain-containing protein. (162 aa)
F6YF53_CIOINRRM domain-containing protein. (159 aa)
Zf(c3h)-11Uncharacterized protein. (409 aa)
F6QGB1_CIOINUncharacterized protein. (363 aa)
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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