9 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2XUY6_CIOIN	Cullin_Nedd8 domain-containing protein; Belongs to the cullin family. (145 aa)
	LOC100184311	Peflin-like. (184 aa)
	LOC100176626	Sorcin-like. (181 aa)
	F6R472_CIOIN	CULLIN_2 domain-containing protein; Belongs to the cullin family. (707 aa)
	LOC100181329	Protein TFG. (442 aa)
	LOC100185622	Programmed cell death protein 6-like. (208 aa)
	F6UMD7_CIOIN	Uncharacterized protein. (677 aa)
	F6SJR0_CIOIN	Uncharacterized protein. (187 aa)
	LOC100183888	Prolactin regulatory element-binding protein-like. (429 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6R472_CIOIN	H2XUY6_CIOIN	ENSCINP00000006037	ENSCINP00000033470	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Cullin_Nedd8 domain-containing protein; Belongs to the cullin family.	0.547
F6UMD7_CIOIN	LOC100181329	ENSCINP00000025954	ENSCINP00000008243	Uncharacterized protein.	Protein TFG.	0.811
F6UMD7_CIOIN	LOC100183888	ENSCINP00000025954	ENSCINP00000029340	Uncharacterized protein.	Prolactin regulatory element-binding protein-like.	0.693
H2XUY6_CIOIN	F6R472_CIOIN	ENSCINP00000033470	ENSCINP00000006037	Cullin_Nedd8 domain-containing protein; Belongs to the cullin family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.547
LOC100181329	F6UMD7_CIOIN	ENSCINP00000008243	ENSCINP00000025954	Protein TFG.	Uncharacterized protein.	0.811
LOC100183888	F6UMD7_CIOIN	ENSCINP00000029340	ENSCINP00000025954	Prolactin regulatory element-binding protein-like.	Uncharacterized protein.	0.693