STRINGSTRING
Bmp2/4 Bmp2/4 H2XM17_CIOIN H2XM17_CIOIN mef2 mef2 F6XZ04_CIOIN F6XZ04_CIOIN nox4 nox4 Q4H307_CIOIN Q4H307_CIOIN F6UXY9_CIOIN F6UXY9_CIOIN tbx2/3 tbx2/3 F6TQ49_CIOIN F6TQ49_CIOIN Tgfbeta2 Tgfbeta2 zf(c2h2)-129 zf(c2h2)-129 Mapkk4 Mapkk4 F6VEQ7_CIOIN F6VEQ7_CIOIN F6YC82_CIOIN F6YC82_CIOIN LOC100176674 LOC100176674 Hand Hand smad4 smad4 LOC100187265 LOC100187265 tbx20 tbx20 F6SPE4_CIOIN F6SPE4_CIOIN LOC778720 LOC778720 LOC100181680 LOC100181680 Sir2-d Sir2-d F6YSA0_CIOIN F6YSA0_CIOIN F6VK85_CIOIN F6VK85_CIOIN H2Y2G5_CIOIN H2Y2G5_CIOIN H2Y0R6_CIOIN H2Y0R6_CIOIN H2Y066_CIOIN H2Y066_CIOIN H2XZE3_CIOIN H2XZE3_CIOIN H2XWT8_CIOIN H2XWT8_CIOIN atg5 atg5 LOC100179388 LOC100179388 srf srf
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Bmp2/4TGFb_propeptide domain-containing protein. (376 aa)
H2XM17_CIOINFAT domain-containing protein. (187 aa)
mef2MADS-box domain-containing protein. (439 aa)
F6XZ04_CIOINUncharacterized protein. (171 aa)
nox4FAD-binding FR-type domain-containing protein. (811 aa)
Q4H307_CIOINProtein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (249 aa)
F6UXY9_CIOINARID domain-containing protein. (428 aa)
tbx2/3T-box containing transcription factor isoform X2. (803 aa)
F6TQ49_CIOINANK_REP_REGION domain-containing protein. (147 aa)
Tgfbeta2TGF_BETA_2 domain-containing protein. (435 aa)
zf(c2h2)-129Zinc finger protein ZF(C2H2)-129 isoform X1. (687 aa)
Mapkk4Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (475 aa)
F6VEQ7_CIOINRFX-type winged-helix domain-containing protein. (624 aa)
F6YC82_CIOINSARAH domain-containing protein. (138 aa)
LOC100176674CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family. (278 aa)
HandBHLH domain-containing protein. (378 aa)
smad4Mothers against decapentaplegic homolog. (527 aa)
LOC100187265Uncharacterized protein. (949 aa)
tbx20Uncharacterized protein. (437 aa)
F6SPE4_CIOINUncharacterized protein. (185 aa)
LOC778720Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (510 aa)
LOC100181680Tafazzin family protein; Belongs to the taffazin family. (260 aa)
Sir2-dDeacetylase sirtuin-type domain-containing protein. (91 aa)
F6YSA0_CIOINUncharacterized protein. (165 aa)
F6VK85_CIOINUncharacterized protein; Belongs to the PI3/PI4-kinase family. (754 aa)
H2Y2G5_CIOINMediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (160 aa)
H2Y0R6_CIOINMediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (227 aa)
H2Y066_CIOINUncharacterized protein. (361 aa)
H2XZE3_CIOINUncharacterized protein. (2228 aa)
H2XWT8_CIOINUncharacterized protein. (206 aa)
atg5Autophagy protein 5; Involved in autophagic vesicle formation. (268 aa)
LOC100179388Uncharacterized protein. (225 aa)
srfTranscription factor protein. (335 aa)
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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