(41 nodes) Pigment granule network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6UGD7_CIOIN	Uncharacterized protein. (469 aa)
	F6SPL0_CIOIN	Uncharacterized protein. (503 aa)
	F6U481_CIOIN	RabBD domain-containing protein. (153 aa)
	LOC100184688	Adenosylhomocysteinase; Belongs to the adenosylhomocysteinase family. (438 aa)
	LOC100184179	Protein disulfide-isomerase. (630 aa)
	LOC100178266	Uncharacterized protein. (213 aa)
	F6UVN7_CIOIN	Uncharacterized protein. (227 aa)
	F6XY03_CIOIN	HATPase_c domain-containing protein. (722 aa)
	LOC100183094	Ras-related protein rab7-like. (206 aa)
	LOC100176488	T-complex protein 1 subunit delta. (540 aa)
	LOC100185647	Uncharacterized protein. (525 aa)
	LOC100186609	Uncharacterized protein; Belongs to the heat shock protein 70 family. (671 aa)
	LOC101242470	Uncharacterized protein; Belongs to the heat shock protein 70 family. (659 aa)
	F7BDH1_CIOIN	BRO1 domain-containing protein. (902 aa)
	F6YNJ1_CIOIN	HATPase_c domain-containing protein. (666 aa)
	H2XWC1_CIOIN	GOLD domain-containing protein. (205 aa)
	F6XND0_CIOIN	Uncharacterized protein. (233 aa)
	H2XYB3_CIOIN	Uncharacterized protein. (810 aa)
	LOC100183296	Fatty acid synthase. (227 aa)
	H2XZB8_CIOIN	C2 domain-containing protein. (300 aa)
	H2Y1S7_CIOIN	Thioredoxin domain-containing protein; Belongs to the protein disulfide isomerase family. (177 aa)
	H2Y1U8_CIOIN	Uncharacterized protein. (232 aa)
	H2Y2U9_CIOIN	Uncharacterized protein. (884 aa)
	H2Y3E5_CIOIN	Uncharacterized protein. (2428 aa)
	F6SWJ9_CIOIN	Uncharacterized protein. (130 aa)
	LOC100178170	Staphylococcal nuclease domain-containing protein; Endonuclease that mediates miRNA decay of both protein-free and AGO2-loaded miRNAs. (919 aa)
	H2XLB7_CIOIN	Uncharacterized protein. (103 aa)
	H2XP77_CIOIN	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family. (206 aa)
	H2XPZ1_CIOIN	Uncharacterized protein. (491 aa)
	LOC100187103	Tetraspanin. (228 aa)
	H2XRE2_CIOIN	HATPase_c domain-containing protein. (169 aa)
	H2XT29_CIOIN	Ncstrn_small domain-containing protein. (568 aa)
	H2XU17_CIOIN	Longin domain-containing protein. (62 aa)
	F7AMF6_CIOIN	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family. (1635 aa)
	LOC100183452	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (203 aa)
	LOC100187335	Cystinosin. (399 aa)
	F7AJ84_CIOIN	Gal_mutarotas_2 domain-containing protein; Belongs to the glycosyl hydrolase 31 family. (932 aa)
	F6WYW5_CIOIN	Protein disulfide-isomerase. (488 aa)
	LOC100182193	Ras-related protein Rab-5B. (217 aa)
	F6VY76_CIOIN	Uncharacterized protein. (210 aa)
	F6TUR1_CIOIN	Thioredoxin domain-containing protein; Belongs to the protein disulfide isomerase family. (373 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6SPL0_CIOIN	F6UGD7_CIOIN	ENSCINP00000010070	ENSCINP00000008838	Uncharacterized protein.	Uncharacterized protein.	0.602
F6SPL0_CIOIN	LOC100185647	ENSCINP00000010070	ENSCINP00000019001	Uncharacterized protein.	Uncharacterized protein.	0.901
F6SWJ9_CIOIN	F6XND0_CIOIN	ENSCINP00000026601	ENSCINP00000024885	Uncharacterized protein.	Uncharacterized protein.	0.417
F6SWJ9_CIOIN	H2XP77_CIOIN	ENSCINP00000026601	ENSCINP00000031460	Uncharacterized protein.	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family.	0.608
F6SWJ9_CIOIN	H2Y1U8_CIOIN	ENSCINP00000026601	ENSCINP00000035883	Uncharacterized protein.	Uncharacterized protein.	0.417
F6SWJ9_CIOIN	LOC100182193	ENSCINP00000026601	ENSCINP00000006853	Uncharacterized protein.	Ras-related protein Rab-5B.	0.651
F6SWJ9_CIOIN	LOC100183094	ENSCINP00000026601	ENSCINP00000015933	Uncharacterized protein.	Ras-related protein rab7-like.	0.498
F6SWJ9_CIOIN	LOC100187103	ENSCINP00000026601	ENSCINP00000025966	Uncharacterized protein.	Tetraspanin.	0.701
F6TUR1_CIOIN	F6WYW5_CIOIN	ENSCINP00000008588	ENSCINP00000005773	Thioredoxin domain-containing protein; Belongs to the protein disulfide isomerase family.	Protein disulfide-isomerase.	0.581
F6TUR1_CIOIN	F6XY03_CIOIN	ENSCINP00000008588	ENSCINP00000015093	Thioredoxin domain-containing protein; Belongs to the protein disulfide isomerase family.	HATPase_c domain-containing protein.	0.773
F6TUR1_CIOIN	H2XRE2_CIOIN	ENSCINP00000008588	ENSCINP00000032226	Thioredoxin domain-containing protein; Belongs to the protein disulfide isomerase family.	HATPase_c domain-containing protein.	0.773
F6TUR1_CIOIN	LOC100184179	ENSCINP00000008588	ENSCINP00000013204	Thioredoxin domain-containing protein; Belongs to the protein disulfide isomerase family.	Protein disulfide-isomerase.	0.553
F6TUR1_CIOIN	LOC100186609	ENSCINP00000008588	ENSCINP00000019205	Thioredoxin domain-containing protein; Belongs to the protein disulfide isomerase family.	Uncharacterized protein; Belongs to the heat shock protein 70 family.	0.704
F6TUR1_CIOIN	LOC101242470	ENSCINP00000008588	ENSCINP00000019494	Thioredoxin domain-containing protein; Belongs to the protein disulfide isomerase family.	Uncharacterized protein; Belongs to the heat shock protein 70 family.	0.704
F6U481_CIOIN	F6XND0_CIOIN	ENSCINP00000011562	ENSCINP00000024885	RabBD domain-containing protein.	Uncharacterized protein.	0.494
F6U481_CIOIN	H2Y1U8_CIOIN	ENSCINP00000011562	ENSCINP00000035883	RabBD domain-containing protein.	Uncharacterized protein.	0.494
F6UGD7_CIOIN	F6SPL0_CIOIN	ENSCINP00000008838	ENSCINP00000010070	Uncharacterized protein.	Uncharacterized protein.	0.602
F6UGD7_CIOIN	LOC100185647	ENSCINP00000008838	ENSCINP00000019001	Uncharacterized protein.	Uncharacterized protein.	0.601
F6VY76_CIOIN	F7AMF6_CIOIN	ENSCINP00000008241	ENSCINP00000003530	Uncharacterized protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.484
F6WYW5_CIOIN	F6TUR1_CIOIN	ENSCINP00000005773	ENSCINP00000008588	Protein disulfide-isomerase.	Thioredoxin domain-containing protein; Belongs to the protein disulfide isomerase family.	0.581