(26 nodes) Regulation of defense response to virus network (Ciona intestinalis)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6TDS0_CIOIN	Uncharacterized protein. (379 aa)
	F6PQS1_CIOIN	Protein kinase domain-containing protein. (190 aa)
	F6YSQ6_CIOIN	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (315 aa)
	F6R6J0_CIOIN	Uncharacterized protein. (585 aa)
	F6WHA2_CIOIN	Tetraspanin. (241 aa)
	F7AP04_CIOIN	Uncharacterized protein. (313 aa)
	F6WF44_CIOIN	Fibrinogen C-terminal domain-containing protein. (187 aa)
	LOC100176674	CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family. (278 aa)
	LOC100187055	SEFIR domain-containing protein. (513 aa)
	F6PLR6_CIOIN	Uncharacterized protein. (176 aa)
	LOC100184905	TRAF3-interacting protein 1. (550 aa)
	F6SQ79_CIOIN	RING-type domain-containing protein. (190 aa)
	F6SQA2_CIOIN	DTC domain-containing protein. (81 aa)
	atg5	Autophagy protein 5; Involved in autophagic vesicle formation. (268 aa)
	LOC100179235	N_BRCA1_IG domain-containing protein. (241 aa)
	H2XXZ3_CIOIN	Uncharacterized protein. (870 aa)
	LOC101242365	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family. (98 aa)
	H2Y1U3_CIOIN	Protein kinase domain-containing protein. (1156 aa)
	F6SQE1_CIOIN	Uncharacterized protein. (651 aa)
	LOC104265809	Polyglutamine-binding protein 1-like. (208 aa)
	H2XR40_CIOIN	RING-type domain-containing protein. (355 aa)
	H2XMV3_CIOIN	Fibrinogen C-terminal domain-containing protein. (229 aa)
	H2XLN7_CIOIN	Uncharacterized protein. (581 aa)
	Creb/atf-b	BZIP domain-containing protein. (542 aa)
	F6X1D6_CIOIN	RWD domain-containing protein. (156 aa)
	F7AIB9_CIOIN	Uncharacterized protein. (271 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6R6J0_CIOIN	H2XR40_CIOIN	ENSCINP00000018366	ENSCINP00000032124	Uncharacterized protein.	RING-type domain-containing protein.	0.560
F6X1D6_CIOIN	H2Y1U3_CIOIN	ENSCINP00000029439	ENSCINP00000035877	RWD domain-containing protein.	Protein kinase domain-containing protein.	0.899
H2XR40_CIOIN	F6R6J0_CIOIN	ENSCINP00000032124	ENSCINP00000018366	RING-type domain-containing protein.	Uncharacterized protein.	0.560
H2Y1U3_CIOIN	F6X1D6_CIOIN	ENSCINP00000035877	ENSCINP00000029439	Protein kinase domain-containing protein.	RWD domain-containing protein.	0.899
LOC100179235	atg5	ENSCINP00000033574	ENSCINP00000033358	N_BRCA1_IG domain-containing protein.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.408
LOC101242365	atg5	ENSCINP00000035340	ENSCINP00000033358	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.999
atg5	LOC100179235	ENSCINP00000033358	ENSCINP00000033574	Autophagy protein 5; Involved in autophagic vesicle formation.	N_BRCA1_IG domain-containing protein.	0.408
atg5	LOC101242365	ENSCINP00000033358	ENSCINP00000035340	Autophagy protein 5; Involved in autophagic vesicle formation.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	0.999