STRINGSTRING
LOC100179839 LOC100179839 zf(c2h2)-102 zf(c2h2)-102 F7A9G9_CIOIN F7A9G9_CIOIN F6PRY2_CIOIN F6PRY2_CIOIN F6PLR6_CIOIN F6PLR6_CIOIN LOC100176033 LOC100176033 Xbpa Xbpa F6VY95_CIOIN F6VY95_CIOIN LOC104265788 LOC104265788 ikk-epsilon ikk-epsilon Tak1/mapkkk7 Tak1/mapkkk7 F6WF44_CIOIN F6WF44_CIOIN F6ZZC3_CIOIN F6ZZC3_CIOIN LOC101243211 LOC101243211 F6UCG0_CIOIN F6UCG0_CIOIN F6RS66_CIOIN F6RS66_CIOIN LOC100175981 LOC100175981 F6RJ81_CIOIN F6RJ81_CIOIN F6U189_CIOIN F6U189_CIOIN LOC100186818 LOC100186818 F6ZVH0_CIOIN F6ZVH0_CIOIN F6ZVG1_CIOIN F6ZVG1_CIOIN bf-3 bf-3 LOC100176493 LOC100176493 LOC100186471 LOC100186471 F6RZ52_CIOIN F6RZ52_CIOIN F7AP04_CIOIN F7AP04_CIOIN xbpd xbpd F6X5U2_CIOIN F6X5U2_CIOIN F6T7M7_CIOIN F6T7M7_CIOIN F6SJH8_CIOIN F6SJH8_CIOIN F6SJ61_CIOIN F6SJ61_CIOIN F6WHA2_CIOIN F6WHA2_CIOIN F6VHM6_CIOIN F6VHM6_CIOIN LOC100184400 LOC100184400 F6PJW3_CIOIN F6PJW3_CIOIN LOC100178703 LOC100178703 F6QTW3_CIOIN F6QTW3_CIOIN F6WCA3_CIOIN F6WCA3_CIOIN F6T0A0_CIOIN F6T0A0_CIOIN LOC113474037 LOC113474037 F7BJS1_CIOIN F7BJS1_CIOIN F6PKW3_CIOIN F6PKW3_CIOIN F6R7P6_CIOIN F6R7P6_CIOIN F6R6J0_CIOIN F6R6J0_CIOIN LOC100184082 LOC100184082 F6XKQ1_CIOIN F6XKQ1_CIOIN F6WXG6_CIOIN F6WXG6_CIOIN Ahr Ahr LOC100185662 LOC100185662 LOC100180168 LOC100180168 F7AD14_CIOIN F7AD14_CIOIN F6R544_CIOIN F6R544_CIOIN LOC100182077 LOC100182077 LOC100186680 LOC100186680 xbpb xbpb F6UAD5_CIOIN F6UAD5_CIOIN LOC100185968 LOC100185968 F6VXZ5_CIOIN F6VXZ5_CIOIN LOC100184455 LOC100184455 F6Y5T9_CIOIN F6Y5T9_CIOIN F6U649_CIOIN F6U649_CIOIN F6PUL6_CIOIN F6PUL6_CIOIN F6PUA9_CIOIN F6PUA9_CIOIN F6PSZ6_CIOIN F6PSZ6_CIOIN F6PSX9_CIOIN F6PSX9_CIOIN F6V7C2_CIOIN F6V7C2_CIOIN ci-tlr2 ci-tlr2 Xbpc Xbpc F6V3U3_CIOIN F6V3U3_CIOIN F7BKM3_CIOIN F7BKM3_CIOIN F6YVN3_CIOIN F6YVN3_CIOIN F6YBZ2_CIOIN F6YBZ2_CIOIN F6PMJ3_CIOIN F6PMJ3_CIOIN F6R9Z3_CIOIN F6R9Z3_CIOIN F6PQS1_CIOIN F6PQS1_CIOIN F6TDS0_CIOIN F6TDS0_CIOIN F6Y0T9_CIOIN F6Y0T9_CIOIN F6XB76_CIOIN F6XB76_CIOIN F7BI62_CIOIN F7BI62_CIOIN F6SWJ9_CIOIN F6SWJ9_CIOIN LOC100187159 LOC100187159 F6T8R8_CIOIN F6T8R8_CIOIN F6SLD6_CIOIN F6SLD6_CIOIN LOC779004 LOC779004 LOC100176004 LOC100176004 F7A1B7_CIOIN F7A1B7_CIOIN F7AIB9_CIOIN F7AIB9_CIOIN F6X1D6_CIOIN F6X1D6_CIOIN F6ZEW6_CIOIN F6ZEW6_CIOIN F6ZEK3_CIOIN F6ZEK3_CIOIN LOC100178835 LOC100178835 H2XKP3_CIOIN H2XKP3_CIOIN H2XKW0_CIOIN H2XKW0_CIOIN H2XKX0_CIOIN H2XKX0_CIOIN LOC100178221 LOC100178221 H2XLN7_CIOIN H2XLN7_CIOIN H2XLU5_CIOIN H2XLU5_CIOIN Q1RPY5_CIOIN Q1RPY5_CIOIN LOC100178517 LOC100178517 H2XMV3_CIOIN H2XMV3_CIOIN LOC100182370 LOC100182370 H2XP40_CIOIN H2XP40_CIOIN H2XPN7_CIOIN H2XPN7_CIOIN H2XPP0_CIOIN H2XPP0_CIOIN LOC100178035 LOC100178035 H2XR13_CIOIN H2XR13_CIOIN H2XR40_CIOIN H2XR40_CIOIN H2XRY8_CIOIN H2XRY8_CIOIN H2XS74_CIOIN H2XS74_CIOIN H2XSA0_CIOIN H2XSA0_CIOIN H2XSG1_CIOIN H2XSG1_CIOIN H2XT38_CIOIN H2XT38_CIOIN H2XU65_CIOIN H2XU65_CIOIN H2XUL2_CIOIN H2XUL2_CIOIN atg5 atg5 H2XUP2_CIOIN H2XUP2_CIOIN H2XUZ5_CIOIN H2XUZ5_CIOIN zf(ring/rbz)-1 zf(ring/rbz)-1 H2Y0J9_CIOIN H2Y0J9_CIOIN H2Y0N7_CIOIN H2Y0N7_CIOIN H2Y0R6_CIOIN H2Y0R6_CIOIN H2Y1U3_CIOIN H2Y1U3_CIOIN H2Y1X7_CIOIN H2Y1X7_CIOIN LOC100182428 LOC100182428 H2Y2G5_CIOIN H2Y2G5_CIOIN H2Y2R4_CIOIN H2Y2R4_CIOIN c3-1 c3-1 LOC100185957 LOC100185957 LOC100177452 LOC100177452 F6RSF3_CIOIN F6RSF3_CIOIN F6V6D5_CIOIN F6V6D5_CIOIN F6V6F4_CIOIN F6V6F4_CIOIN LOC104265809 LOC104265809 LOC100182748 LOC100182748 F7AJJ2_CIOIN F7AJJ2_CIOIN F6QM01_CIOIN F6QM01_CIOIN Rev-erb Rev-erb LOC100176571 LOC100176571 F6PP61_CIOIN F6PP61_CIOIN F6ZPY9_CIOIN F6ZPY9_CIOIN mT mT F6RZT0_CIOIN F6RZT0_CIOIN F6YKS6_CIOIN F6YKS6_CIOIN F6YRG2_CIOIN F6YRG2_CIOIN LOC100177697 LOC100177697 F6SX89_CIOIN F6SX89_CIOIN F6SYW5_CIOIN F6SYW5_CIOIN F7B0D1_CIOIN F7B0D1_CIOIN F7BAT7_CIOIN F7BAT7_CIOIN LOC100181983 LOC100181983 H2XXT8_CIOIN H2XXT8_CIOIN hlx hlx H2XZF2_CIOIN H2XZF2_CIOIN LOC101242365 LOC101242365 F7AGV3_CIOIN F7AGV3_CIOIN F6R497_CIOIN F6R497_CIOIN F6QXU2_CIOIN F6QXU2_CIOIN F6UA31_CIOIN F6UA31_CIOIN F7BH80_CIOIN F7BH80_CIOIN F6U899_CIOIN F6U899_CIOIN Ci-FXR Ci-FXR LOC100180825 LOC100180825 F6TAK3_CIOIN F6TAK3_CIOIN F6RWR9_CIOIN F6RWR9_CIOIN F6TUF1_CIOIN F6TUF1_CIOIN F7BQ44_CIOIN F7BQ44_CIOIN F6S6B2_CIOIN F6S6B2_CIOIN
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC100179839Sorting nexin-4-like. (441 aa)
zf(c2h2)-102ATP-dependent DNA helicase II subunit 2; Single-stranded DNA-dependent ATP-dependent helicase. (706 aa)
F7A9G9_CIOINRING-type domain-containing protein. (966 aa)
F6PRY2_CIOINUncharacterized protein. (655 aa)
F6PLR6_CIOINUncharacterized protein. (176 aa)
LOC100176033KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family. (263 aa)
XbpaBZIP domain-containing protein. (309 aa)
F6VY95_CIOINUncharacterized protein. (657 aa)
LOC104265788CASPASE_P20 domain-containing protein; Belongs to the peptidase C14A family. (199 aa)
ikk-epsilonikappaB kinase isoform X1. (797 aa)
Tak1/mapkkk7Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (190 aa)
F6WF44_CIOINFibrinogen C-terminal domain-containing protein. (187 aa)
F6ZZC3_CIOINUncharacterized protein. (324 aa)
LOC101243211Translation initiation factor eIF-2B subunit alpha; Belongs to the eIF-2B alpha/beta/delta subunits family. (305 aa)
F6UCG0_CIOINDNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR). (943 aa)
F6RS66_CIOINProtein kinase domain-containing protein; Belongs to the protein kinase superfamily. (462 aa)
LOC100175981Phospholipase A(2). (201 aa)
F6RJ81_CIOINANK_REP_REGION domain-containing protein. (400 aa)
F6U189_CIOINUncharacterized protein. (163 aa)
LOC100186818RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (520 aa)
F6ZVH0_CIOINUncharacterized protein. (205 aa)
F6ZVG1_CIOINUncharacterized protein; Belongs to the RNA polymerase beta chain family. (275 aa)
bf-3Uncharacterized protein; Belongs to the peptidase S1 family. (977 aa)
LOC100176493AAA domain-containing protein. (844 aa)
LOC100186471MORN repeat-containing protein 5-like. (270 aa)
F6RZ52_CIOINUncharacterized protein. (498 aa)
F7AP04_CIOINUncharacterized protein. (313 aa)
xbpdTranscription factor protein isoform X1. (366 aa)
F6X5U2_CIOINArginase. (373 aa)
F6T7M7_CIOINUncharacterized protein. (492 aa)
F6SJH8_CIOINS1 motif domain-containing protein. (450 aa)
F6SJ61_CIOINHTH_44 domain-containing protein. (505 aa)
F6WHA2_CIOINTetraspanin. (241 aa)
F6VHM6_CIOINAB hydrolase-1 domain-containing protein. (242 aa)
LOC100184400DNA-directed RNA polymerase III subunit RPC4. (349 aa)
F6PJW3_CIOINUncharacterized protein. (162 aa)
LOC100178703Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (361 aa)
F6QTW3_CIOINTyrosine-protein kinase. (626 aa)
F6WCA3_CIOINUncharacterized protein. (855 aa)
F6T0A0_CIOINMACPF domain-containing protein. (501 aa)
LOC113474037Complement component C6-like isoform X2. (421 aa)
F7BJS1_CIOINGH16 domain-containing protein. (554 aa)
F6PKW3_CIOINTyrosine-protein kinase. (838 aa)
F6R7P6_CIOINMACPF domain-containing protein. (546 aa)
F6R6J0_CIOINUncharacterized protein. (585 aa)
LOC100184082Uncharacterized protein LOC100184082 isoform X2. (537 aa)
F6XKQ1_CIOINPHB domain-containing protein. (351 aa)
F6WXG6_CIOINUncharacterized protein; Belongs to the peptidase C1 family. (333 aa)
AhrUncharacterized protein. (865 aa)
LOC100185662Lysine--tRNA ligase. (576 aa)
LOC100180168Protein LSM14 homolog A-B isoform X1. (518 aa)
F7AD14_CIOINUncharacterized protein. (118 aa)
F6R544_CIOINUncharacterized protein. (87 aa)
LOC100182077TNFAIP3-interacting protein 1 isoform X2. (729 aa)
LOC100186680Caspase recruitment domain-containing protein 11-like isoform X1. (418 aa)
xbpbTranscription factor protein. (238 aa)
F6UAD5_CIOINGH16 domain-containing protein. (205 aa)
LOC100185968Caspase-6-like isoform X1; Belongs to the peptidase C14A family. (279 aa)
F6VXZ5_CIOINTIR domain-containing protein. (139 aa)
LOC100184455Phospholipase A(2). (199 aa)
F6Y5T9_CIOINSH2 domain-containing protein. (463 aa)
F6U649_CIOINUncharacterized protein. (1315 aa)
F6PUL6_CIOINHelicase ATP-binding domain-containing protein. (410 aa)
F6PUA9_CIOINUncharacterized protein. (366 aa)
F6PSZ6_CIOINUncharacterized protein. (205 aa)
F6PSX9_CIOINUncharacterized protein. (240 aa)
F6V7C2_CIOINProtein kinase domain-containing protein. (521 aa)
ci-tlr2TIR domain-containing protein; Belongs to the Toll-like receptor family. (947 aa)
XbpcBZIP domain-containing protein. (437 aa)
F6V3U3_CIOINUncharacterized protein. (168 aa)
F7BKM3_CIOINUncharacterized protein. (506 aa)
F6YVN3_CIOINUncharacterized protein. (165 aa)
F6YBZ2_CIOINPoly [ADP-ribose] polymerase. (381 aa)
F6PMJ3_CIOINUncharacterized protein. (219 aa)
F6R9Z3_CIOINPeptidase S1 domain-containing protein; Belongs to the peptidase S1 family. (166 aa)
F6PQS1_CIOINProtein kinase domain-containing protein. (190 aa)
F6TDS0_CIOINUncharacterized protein. (379 aa)
F6Y0T9_CIOINHD domain-containing protein. (481 aa)
F6XB76_CIOINSPT6_acidic domain-containing protein. (206 aa)
F7BI62_CIOINNTP_transferase domain-containing protein. (453 aa)
F6SWJ9_CIOINUncharacterized protein. (130 aa)
LOC100187159Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family. (356 aa)
F6T8R8_CIOINDNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (311 aa)
F6SLD6_CIOINDeacetylase sirtuin-type domain-containing protein. (737 aa)
LOC779004Transcription factor protein. (553 aa)
LOC100176004PH domain-containing protein. (214 aa)
F7A1B7_CIOINUncharacterized protein. (185 aa)
F7AIB9_CIOINUncharacterized protein. (271 aa)
F6X1D6_CIOINRWD domain-containing protein. (156 aa)
F6ZEW6_CIOINDeath domain-containing protein. (197 aa)
F6ZEK3_CIOINUncharacterized protein. (194 aa)
LOC100178835Cell growth-regulating nucleolar protein-like. (284 aa)
H2XKP3_CIOINA to I editase domain-containing protein. (177 aa)
H2XKW0_CIOINUncharacterized protein. (118 aa)
H2XKX0_CIOINUncharacterized protein. (262 aa)
LOC100178221Complement receptor type 1. (287 aa)
H2XLN7_CIOINUncharacterized protein. (581 aa)
H2XLU5_CIOINMACPF domain-containing protein. (562 aa)
Q1RPY5_CIOINZinc finger protein. (579 aa)
LOC100178517Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (142 aa)
H2XMV3_CIOINFibrinogen C-terminal domain-containing protein. (229 aa)
LOC100182370Cytochrome b-245 light chain isoform X1. (175 aa)
H2XP40_CIOINRNA_pol_Rpb2_1 domain-containing protein. (178 aa)
H2XPN7_CIOINUncharacterized protein. (667 aa)
H2XPP0_CIOINDRBM domain-containing protein. (194 aa)
LOC100178035Sulfhydryl oxidase. (156 aa)
H2XR13_CIOINRNA_pol_Rpb2_6 domain-containing protein. (135 aa)
H2XR40_CIOINRING-type domain-containing protein. (355 aa)
H2XRY8_CIOINRibosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (404 aa)
H2XS74_CIOINUncharacterized protein. (301 aa)
H2XSA0_CIOINUncharacterized protein. (181 aa)
H2XSG1_CIOINUncharacterized protein. (247 aa)
H2XT38_CIOINUncharacterized protein. (237 aa)
H2XU65_CIOINKH_dom_type_1 domain-containing protein. (241 aa)
H2XUL2_CIOINUncharacterized protein. (299 aa)
atg5Autophagy protein 5; Involved in autophagic vesicle formation. (268 aa)
H2XUP2_CIOINV-SNARE coiled-coil homology domain-containing protein. (84 aa)
H2XUZ5_CIOINDC_STAMP domain-containing protein. (138 aa)
zf(ring/rbz)-1Zn-finger (RING/Ran-binding)-1. (508 aa)
H2Y0J9_CIOINTIR domain-containing protein. (125 aa)
H2Y0N7_CIOINPkinase_Tyr domain-containing protein. (196 aa)
H2Y0R6_CIOINMediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (227 aa)
H2Y1U3_CIOINProtein kinase domain-containing protein. (1156 aa)
H2Y1X7_CIOINUncharacterized protein. (191 aa)
LOC100182428NF-kappa-B inhibitor zeta-like isoform X1. (649 aa)
H2Y2G5_CIOINMediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (160 aa)
H2Y2R4_CIOINUncharacterized protein. (167 aa)
c3-1NTR domain-containing protein. (1771 aa)
LOC100185957Mucosa-associated lymphoid tissue lymphoma translocation protein 1-like isoform X1. (624 aa)
LOC100177452Uncharacterized protein. (603 aa)
F6RSF3_CIOINSET domain-containing protein. (227 aa)
F6V6D5_CIOINNTP_transferase domain-containing protein. (267 aa)
F6V6F4_CIOINW2 domain-containing protein. (563 aa)
LOC104265809Polyglutamine-binding protein 1-like. (208 aa)
LOC100182748DNA_mis_repair domain-containing protein. (751 aa)
F7AJJ2_CIOINUncharacterized protein. (2023 aa)
F6QM01_CIOINMacro domain-containing protein. (247 aa)
Rev-erbUncharacterized protein. (597 aa)
LOC100176571Uncharacterized protein; Belongs to the ubiquitin-conjugating enzyme family. (198 aa)
F6PP61_CIOINProteasome subunit beta; Belongs to the peptidase T1B family. (260 aa)
F6ZPY9_CIOINMetallophos domain-containing protein. (385 aa)
mTUncharacterized protein. (812 aa)
F6RZT0_CIOINUncharacterized protein; Belongs to the peptidase C14A family. (262 aa)
F6YKS6_CIOINUncharacterized protein. (1773 aa)
F6YRG2_CIOINCaveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (211 aa)
LOC100177697Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (236 aa)
F6SX89_CIOINUncharacterized protein. (382 aa)
F6SYW5_CIOINUncharacterized protein. (684 aa)
F7B0D1_CIOINGH16 domain-containing protein. (237 aa)
F7BAT7_CIOINProhibitin. (271 aa)
LOC100181983PRKC apoptosis WT1 regulator protein-like. (304 aa)
H2XXT8_CIOINUncharacterized protein. (189 aa)
hlxHomeobox domain-containing protein. (554 aa)
H2XZF2_CIOINTIR domain-containing protein. (883 aa)
LOC101242365Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family. (98 aa)
F7AGV3_CIOINUncharacterized protein; Belongs to the peptidase S1 family. (734 aa)
F6R497_CIOINPoly [ADP-ribose] polymerase. (353 aa)
F6QXU2_CIOINBTB domain-containing protein. (562 aa)
F6UA31_CIOINUncharacterized protein. (327 aa)
F7BH80_CIOINUncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family. (482 aa)
F6U899_CIOINDJ-1_PfpI domain-containing protein. (187 aa)
Ci-FXRNuclear receptor. (294 aa)
LOC100180825RING-type domain-containing protein. (215 aa)
F6TAK3_CIOINPUM-HD domain-containing protein. (782 aa)
F6RWR9_CIOINUncharacterized protein. (533 aa)
F6TUF1_CIOINUncharacterized protein. (1863 aa)
F7BQ44_CIOINYTH domain-containing protein. (572 aa)
F6S6B2_CIOINPhosphoinositide phospholipase C. (1236 aa)
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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