STRINGSTRING
LOC100179839 LOC100179839 F6V6F4_CIOIN F6V6F4_CIOIN F6V6D5_CIOIN F6V6D5_CIOIN F6RSF3_CIOIN F6RSF3_CIOIN LOC100177452 LOC100177452 F7BAT7_CIOIN F7BAT7_CIOIN F7B0D1_CIOIN F7B0D1_CIOIN F6YKS6_CIOIN F6YKS6_CIOIN F6RZT0_CIOIN F6RZT0_CIOIN mT mT LOC100176571 LOC100176571 LOC100182748 LOC100182748 LOC104265809 LOC104265809 F7AGV3_CIOIN F7AGV3_CIOIN F6QXU2_CIOIN F6QXU2_CIOIN F7BH80_CIOIN F7BH80_CIOIN F6U899_CIOIN F6U899_CIOIN LOC100180825 LOC100180825 F6RWR9_CIOIN F6RWR9_CIOIN F6S6B2_CIOIN F6S6B2_CIOIN zf(c2h2)-102 zf(c2h2)-102 F7A9G9_CIOIN F7A9G9_CIOIN F6PLR6_CIOIN F6PLR6_CIOIN LOC100176033 LOC100176033 Xbpa Xbpa F6VY95_CIOIN F6VY95_CIOIN LOC104265788 LOC104265788 ikk-epsilon ikk-epsilon Tak1/mapkkk7 Tak1/mapkkk7 F6ZZC3_CIOIN F6ZZC3_CIOIN LOC101243211 LOC101243211 F6UCG0_CIOIN F6UCG0_CIOIN F6RS66_CIOIN F6RS66_CIOIN F6U189_CIOIN F6U189_CIOIN LOC100186818 LOC100186818 F6ZVH0_CIOIN F6ZVH0_CIOIN F6ZVG1_CIOIN F6ZVG1_CIOIN bf-3 bf-3 LOC100176493 LOC100176493 LOC100186471 LOC100186471 xbpd xbpd F6VHM6_CIOIN F6VHM6_CIOIN LOC100184400 LOC100184400 F6QTW3_CIOIN F6QTW3_CIOIN F6WCA3_CIOIN F6WCA3_CIOIN F6T0A0_CIOIN F6T0A0_CIOIN LOC113474037 LOC113474037 F7BJS1_CIOIN F7BJS1_CIOIN F6R7P6_CIOIN F6R7P6_CIOIN F6R6J0_CIOIN F6R6J0_CIOIN LOC100184082 LOC100184082 F6XKQ1_CIOIN F6XKQ1_CIOIN LOC100185662 LOC100185662 LOC100180168 LOC100180168 LOC100186680 LOC100186680 xbpb xbpb F6UAD5_CIOIN F6UAD5_CIOIN LOC100185968 LOC100185968 F6U649_CIOIN F6U649_CIOIN F6V7C2_CIOIN F6V7C2_CIOIN Xbpc Xbpc F6V3U3_CIOIN F6V3U3_CIOIN F6YVN3_CIOIN F6YVN3_CIOIN F6R9Z3_CIOIN F6R9Z3_CIOIN F6PQS1_CIOIN F6PQS1_CIOIN F7BI62_CIOIN F7BI62_CIOIN F6SWJ9_CIOIN F6SWJ9_CIOIN LOC100187159 LOC100187159 F6T8R8_CIOIN F6T8R8_CIOIN F6SLD6_CIOIN F6SLD6_CIOIN LOC779004 LOC779004 F7AIB9_CIOIN F7AIB9_CIOIN F6X1D6_CIOIN F6X1D6_CIOIN H2XLU5_CIOIN H2XLU5_CIOIN Q1RPY5_CIOIN Q1RPY5_CIOIN H2XP40_CIOIN H2XP40_CIOIN H2XR13_CIOIN H2XR13_CIOIN H2XSG1_CIOIN H2XSG1_CIOIN H2XU65_CIOIN H2XU65_CIOIN H2XUP2_CIOIN H2XUP2_CIOIN zf(ring/rbz)-1 zf(ring/rbz)-1 H2XXT8_CIOIN H2XXT8_CIOIN hlx hlx H2Y0N7_CIOIN H2Y0N7_CIOIN H2Y0R6_CIOIN H2Y0R6_CIOIN H2Y1U3_CIOIN H2Y1U3_CIOIN H2Y1X7_CIOIN H2Y1X7_CIOIN LOC100182428 LOC100182428 H2Y2G5_CIOIN H2Y2G5_CIOIN c3-1 c3-1 LOC100185957 LOC100185957
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC100179839Sorting nexin-4-like. (441 aa)
F6V6F4_CIOINW2 domain-containing protein. (563 aa)
F6V6D5_CIOINNTP_transferase domain-containing protein. (267 aa)
F6RSF3_CIOINSET domain-containing protein. (227 aa)
LOC100177452Uncharacterized protein. (603 aa)
F7BAT7_CIOINProhibitin. (271 aa)
F7B0D1_CIOINGH16 domain-containing protein. (237 aa)
F6YKS6_CIOINUncharacterized protein. (1773 aa)
F6RZT0_CIOINUncharacterized protein; Belongs to the peptidase C14A family. (262 aa)
mTUncharacterized protein. (812 aa)
LOC100176571Uncharacterized protein; Belongs to the ubiquitin-conjugating enzyme family. (198 aa)
LOC100182748DNA_mis_repair domain-containing protein. (751 aa)
LOC104265809Polyglutamine-binding protein 1-like. (208 aa)
F7AGV3_CIOINUncharacterized protein; Belongs to the peptidase S1 family. (734 aa)
F6QXU2_CIOINBTB domain-containing protein. (562 aa)
F7BH80_CIOINUncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family. (482 aa)
F6U899_CIOINDJ-1_PfpI domain-containing protein. (187 aa)
LOC100180825RING-type domain-containing protein. (215 aa)
F6RWR9_CIOINUncharacterized protein. (533 aa)
F6S6B2_CIOINPhosphoinositide phospholipase C. (1236 aa)
zf(c2h2)-102ATP-dependent DNA helicase II subunit 2; Single-stranded DNA-dependent ATP-dependent helicase. (706 aa)
F7A9G9_CIOINRING-type domain-containing protein. (966 aa)
F6PLR6_CIOINUncharacterized protein. (176 aa)
LOC100176033KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family. (263 aa)
XbpaBZIP domain-containing protein. (309 aa)
F6VY95_CIOINUncharacterized protein. (657 aa)
LOC104265788CASPASE_P20 domain-containing protein; Belongs to the peptidase C14A family. (199 aa)
ikk-epsilonikappaB kinase isoform X1. (797 aa)
Tak1/mapkkk7Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (190 aa)
F6ZZC3_CIOINUncharacterized protein. (324 aa)
LOC101243211Translation initiation factor eIF-2B subunit alpha; Belongs to the eIF-2B alpha/beta/delta subunits family. (305 aa)
F6UCG0_CIOINDNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR). (943 aa)
F6RS66_CIOINProtein kinase domain-containing protein; Belongs to the protein kinase superfamily. (462 aa)
F6U189_CIOINUncharacterized protein. (163 aa)
LOC100186818RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (520 aa)
F6ZVH0_CIOINUncharacterized protein. (205 aa)
F6ZVG1_CIOINUncharacterized protein; Belongs to the RNA polymerase beta chain family. (275 aa)
bf-3Uncharacterized protein; Belongs to the peptidase S1 family. (977 aa)
LOC100176493AAA domain-containing protein. (844 aa)
LOC100186471MORN repeat-containing protein 5-like. (270 aa)
xbpdTranscription factor protein isoform X1. (366 aa)
F6VHM6_CIOINAB hydrolase-1 domain-containing protein. (242 aa)
LOC100184400DNA-directed RNA polymerase III subunit RPC4. (349 aa)
F6QTW3_CIOINTyrosine-protein kinase. (626 aa)
F6WCA3_CIOINUncharacterized protein. (855 aa)
F6T0A0_CIOINMACPF domain-containing protein. (501 aa)
LOC113474037Complement component C6-like isoform X2. (421 aa)
F7BJS1_CIOINGH16 domain-containing protein. (554 aa)
F6R7P6_CIOINMACPF domain-containing protein. (546 aa)
F6R6J0_CIOINUncharacterized protein. (585 aa)
LOC100184082Uncharacterized protein LOC100184082 isoform X2. (537 aa)
F6XKQ1_CIOINPHB domain-containing protein. (351 aa)
LOC100185662Lysine--tRNA ligase. (576 aa)
LOC100180168Protein LSM14 homolog A-B isoform X1. (518 aa)
LOC100186680Caspase recruitment domain-containing protein 11-like isoform X1. (418 aa)
xbpbTranscription factor protein. (238 aa)
F6UAD5_CIOINGH16 domain-containing protein. (205 aa)
LOC100185968Caspase-6-like isoform X1; Belongs to the peptidase C14A family. (279 aa)
F6U649_CIOINUncharacterized protein. (1315 aa)
F6V7C2_CIOINProtein kinase domain-containing protein. (521 aa)
XbpcBZIP domain-containing protein. (437 aa)
F6V3U3_CIOINUncharacterized protein. (168 aa)
F6YVN3_CIOINUncharacterized protein. (165 aa)
F6R9Z3_CIOINPeptidase S1 domain-containing protein; Belongs to the peptidase S1 family. (166 aa)
F6PQS1_CIOINProtein kinase domain-containing protein. (190 aa)
F7BI62_CIOINNTP_transferase domain-containing protein. (453 aa)
F6SWJ9_CIOINUncharacterized protein. (130 aa)
LOC100187159Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family. (356 aa)
F6T8R8_CIOINDNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (311 aa)
F6SLD6_CIOINDeacetylase sirtuin-type domain-containing protein. (737 aa)
LOC779004Transcription factor protein. (553 aa)
F7AIB9_CIOINUncharacterized protein. (271 aa)
F6X1D6_CIOINRWD domain-containing protein. (156 aa)
H2XLU5_CIOINMACPF domain-containing protein. (562 aa)
Q1RPY5_CIOINZinc finger protein. (579 aa)
H2XP40_CIOINRNA_pol_Rpb2_1 domain-containing protein. (178 aa)
H2XR13_CIOINRNA_pol_Rpb2_6 domain-containing protein. (135 aa)
H2XSG1_CIOINUncharacterized protein. (247 aa)
H2XU65_CIOINKH_dom_type_1 domain-containing protein. (241 aa)
H2XUP2_CIOINV-SNARE coiled-coil homology domain-containing protein. (84 aa)
zf(ring/rbz)-1Zn-finger (RING/Ran-binding)-1. (508 aa)
H2XXT8_CIOINUncharacterized protein. (189 aa)
hlxHomeobox domain-containing protein. (554 aa)
H2Y0N7_CIOINPkinase_Tyr domain-containing protein. (196 aa)
H2Y0R6_CIOINMediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (227 aa)
H2Y1U3_CIOINProtein kinase domain-containing protein. (1156 aa)
H2Y1X7_CIOINUncharacterized protein. (191 aa)
LOC100182428NF-kappa-B inhibitor zeta-like isoform X1. (649 aa)
H2Y2G5_CIOINMediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (160 aa)
c3-1NTR domain-containing protein. (1771 aa)
LOC100185957Mucosa-associated lymphoid tissue lymphoma translocation protein 1-like isoform X1. (624 aa)
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
Server load: medium (68%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.