(40 nodes) Regulation of synapse organization network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6SKB5_CIOIN	Uncharacterized protein. (411 aa)
	F6ZH24_CIOIN	Uncharacterized protein. (1903 aa)
	LOC100176360	SLIT and NTRK-like protein 5. (305 aa)
	LOC100180632	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting. (804 aa)
	H2Y397_CIOIN	Uncharacterized protein. (618 aa)
	H2Y2K0_CIOIN	Uncharacterized protein. (399 aa)
	H2Y1T8_CIOIN	G_PROTEIN_RECEP_F1_2 domain-containing protein. (149 aa)
	H2Y0V6_CIOIN	Uncharacterized protein. (204 aa)
	LOC100180100	Uncharacterized protein. (204 aa)
	H2XY58_CIOIN	PHR domain-containing protein. (416 aa)
	H2XVY8_CIOIN	Uncharacterized protein. (331 aa)
	H2XU25_CIOIN	NtA domain-containing protein. (184 aa)
	H2XT32_CIOIN	Uncharacterized protein. (127 aa)
	H2XSZ6_CIOIN	ANK_REP_REGION domain-containing protein. (1058 aa)
	H2XRP4_CIOIN	Uncharacterized protein. (126 aa)
	H2XQC5_CIOIN	Uncharacterized protein. (227 aa)
	H2XPL3_CIOIN	Uncharacterized protein. (434 aa)
	H2XL89_CIOIN	PHR domain-containing protein. (208 aa)
	H2XKP9_CIOIN	Uncharacterized protein. (329 aa)
	F6ZGD0_CIOIN	SAM domain-containing protein. (261 aa)
	F7AZQ8_CIOIN	Uncharacterized protein. (720 aa)
	F6XU21_CIOIN	Ig-like domain-containing protein. (552 aa)
	F6W6K0_CIOIN	Uncharacterized protein. (534 aa)
	F6ZSD7_CIOIN	Uncharacterized protein. (674 aa)
	F6YDG1_CIOIN	CULLIN_2 domain-containing protein; Belongs to the cullin family. (586 aa)
	F6U9S1_CIOIN	RING-type domain-containing protein. (911 aa)
	LOC100184817	Growth hormone secretagogue receptor type 1-like. (366 aa)
	F6RYH5_CIOIN	Uncharacterized protein. (814 aa)
	F7B690_CIOIN	CAP-Gly domain-containing protein. (1092 aa)
	F6ZFJ9_CIOIN	Alpha-type protein kinase domain-containing protein. (678 aa)
	LOC100181289	Cyclin-dependent-like kinase 5; Belongs to the protein kinase superfamily. (292 aa)
	F6XVY9_CIOIN	HECT domain-containing protein. (862 aa)
	F6YD02_CIOIN	Hydrolase_4 domain-containing protein. (288 aa)
	F6W122_CIOIN	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (1029 aa)
	F7AG40_CIOIN	C1q domain-containing protein. (171 aa)
	rngi	Caprin-1_dimer domain-containing protein. (703 aa)
	F6S0L5_CIOIN	Uncharacterized protein. (985 aa)
	F6Z402_CIOIN	Peptidase S72 domain-containing protein. (410 aa)
	F6ZLD5_CIOIN	Protein kinase domain-containing protein. (164 aa)
	F6SKC4_CIOIN	Uncharacterized protein. (188 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6SKB5_CIOIN	F6SKC4_CIOIN	ENSCINP00000022604	ENSCINP00000022602	Uncharacterized protein.	Uncharacterized protein.	0.480
F6SKB5_CIOIN	F6W122_CIOIN	ENSCINP00000022604	ENSCINP00000018782	Uncharacterized protein.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.510
F6SKB5_CIOIN	F6ZSD7_CIOIN	ENSCINP00000022604	ENSCINP00000004251	Uncharacterized protein.	Uncharacterized protein.	0.510
F6SKC4_CIOIN	F6SKB5_CIOIN	ENSCINP00000022602	ENSCINP00000022604	Uncharacterized protein.	Uncharacterized protein.	0.480
F6SKC4_CIOIN	F6W122_CIOIN	ENSCINP00000022602	ENSCINP00000018782	Uncharacterized protein.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.623
F6SKC4_CIOIN	F6ZSD7_CIOIN	ENSCINP00000022602	ENSCINP00000004251	Uncharacterized protein.	Uncharacterized protein.	0.623
F6U9S1_CIOIN	H2XY58_CIOIN	ENSCINP00000007159	ENSCINP00000034592	RING-type domain-containing protein.	PHR domain-containing protein.	0.943
F6W122_CIOIN	F6SKB5_CIOIN	ENSCINP00000018782	ENSCINP00000022604	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	Uncharacterized protein.	0.510
F6W122_CIOIN	F6SKC4_CIOIN	ENSCINP00000018782	ENSCINP00000022602	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	Uncharacterized protein.	0.623
F6W122_CIOIN	F6XU21_CIOIN	ENSCINP00000018782	ENSCINP00000003933	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	Ig-like domain-containing protein.	0.631
F6W122_CIOIN	H2XKP9_CIOIN	ENSCINP00000018782	ENSCINP00000030231	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	Uncharacterized protein.	0.645
F6W122_CIOIN	H2XVY8_CIOIN	ENSCINP00000018782	ENSCINP00000033822	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	Uncharacterized protein.	0.645
F6W122_CIOIN	LOC100176360	ENSCINP00000018782	ENSCINP00000024720	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	SLIT and NTRK-like protein 5.	0.633
F6XU21_CIOIN	F6W122_CIOIN	ENSCINP00000003933	ENSCINP00000018782	Ig-like domain-containing protein.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.631
F6XU21_CIOIN	F6ZSD7_CIOIN	ENSCINP00000003933	ENSCINP00000004251	Ig-like domain-containing protein.	Uncharacterized protein.	0.631
F6Z402_CIOIN	F6ZH24_CIOIN	ENSCINP00000018986	ENSCINP00000024218	Peptidase S72 domain-containing protein.	Uncharacterized protein.	0.710
F6Z402_CIOIN	H2XU25_CIOIN	ENSCINP00000018986	ENSCINP00000033159	Peptidase S72 domain-containing protein.	NtA domain-containing protein.	0.969
F6ZH24_CIOIN	F6Z402_CIOIN	ENSCINP00000024218	ENSCINP00000018986	Uncharacterized protein.	Peptidase S72 domain-containing protein.	0.710
F6ZLD5_CIOIN	LOC100180632	ENSCINP00000022439	ENSCINP00000000530	Protein kinase domain-containing protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.490
F6ZSD7_CIOIN	F6SKB5_CIOIN	ENSCINP00000004251	ENSCINP00000022604	Uncharacterized protein.	Uncharacterized protein.	0.510