(36 nodes) Chaperone binding network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100187265	Uncharacterized protein. (949 aa)
	F6R982_CIOIN	WD_REPEATS_REGION domain-containing protein. (433 aa)
	F6VAW2_CIOIN	Uncharacterized protein. (603 aa)
	LOC100177909	Iron-sulfur cluster co-chaperone protein HscB, mitochondrial-like isoform X1. (266 aa)
	F6YBW0_CIOIN	J domain-containing protein. (342 aa)
	LOC100185452	Uncharacterized protein. (389 aa)
	L7N0S8_CIOIN	Uncharacterized protein. (448 aa)
	F6SAX1_CIOIN	Uncharacterized protein. (130 aa)
	F6VKW3_CIOIN	Uncharacterized protein. (320 aa)
	LOC100176568	J domain-containing protein-like. (152 aa)
	F6WTE3_CIOIN	Uncharacterized protein; Belongs to the chaperonin (HSP60) family. (574 aa)
	LOC100186653	dnaJ homolog subfamily A member 1-like. (403 aa)
	F6RCH7_CIOIN	Uncharacterized protein. (278 aa)
	LOC100180800	dnaJ homolog subfamily C member 3. (501 aa)
	F6S306_CIOIN	J domain-containing protein. (338 aa)
	F6Y978_CIOIN	UDENN FNIP1/2-type domain-containing protein. (982 aa)
	F6WUA7_CIOIN	J domain-containing protein. (237 aa)
	F6PSZ6_CIOIN	Uncharacterized protein. (205 aa)
	F6PSX9_CIOIN	Uncharacterized protein. (240 aa)
	F6TTH0_CIOIN	Uncharacterized protein. (426 aa)
	LOC100187058	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family. (215 aa)
	F6YVN3_CIOIN	Uncharacterized protein. (165 aa)
	F6SQY7_CIOIN	J domain-containing protein. (380 aa)
	F7AZM4_CIOIN	Uncharacterized protein. (161 aa)
	LOC100179637	Protein SGT1 homolog. (229 aa)
	LOC100183218	10 kDa heat shock protein, mitochondrial-like; Belongs to the GroES chaperonin family. (102 aa)
	H2XMA8_CIOIN	Uncharacterized protein. (446 aa)
	H2XPZ3_CIOIN	Uncharacterized protein. (365 aa)
	H2XRR7_CIOIN	J domain-containing protein. (229 aa)
	LOC100177695	Uncharacterized protein. (236 aa)
	H2Y1D3_CIOIN	Uncharacterized protein. (132 aa)
	Hsp40	J domain-containing protein. (313 aa)
	LOC100186487	Mitochondrial import inner membrane translocase subunit TIM44; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the Tim44 family. (431 aa)
	F6WYY0_CIOIN	DUF3456 domain-containing protein. (93 aa)
	LOC100175116	Uncharacterized protein LOC100175116 isoform X2. (210 aa)
	F6ZUM5_CIOIN	Uncharacterized protein. (508 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6RCH7_CIOIN	H2XMA8_CIOIN	ENSCINP00000018308	ENSCINP00000030791	Uncharacterized protein.	Uncharacterized protein.	0.897
F6RCH7_CIOIN	LOC100185452	ENSCINP00000018308	ENSCINP00000013301	Uncharacterized protein.	Uncharacterized protein.	0.569
F6RCH7_CIOIN	LOC100187265	ENSCINP00000018308	ENSCINP00000009399	Uncharacterized protein.	Uncharacterized protein.	0.695
F6S306_CIOIN	H2XPZ3_CIOIN	ENSCINP00000020845	ENSCINP00000031727	J domain-containing protein.	Uncharacterized protein.	0.949
F6S306_CIOIN	L7N0S8_CIOIN	ENSCINP00000020845	ENSCINP00000013398	J domain-containing protein.	Uncharacterized protein.	0.951
F6SQY7_CIOIN	F6WTE3_CIOIN	ENSCINP00000025681	ENSCINP00000016022	J domain-containing protein.	Uncharacterized protein; Belongs to the chaperonin (HSP60) family.	0.469
F6SQY7_CIOIN	F6WUA7_CIOIN	ENSCINP00000025681	ENSCINP00000021959	J domain-containing protein.	J domain-containing protein.	0.620
F6SQY7_CIOIN	F6YBW0_CIOIN	ENSCINP00000025681	ENSCINP00000012873	J domain-containing protein.	J domain-containing protein.	0.766
F6SQY7_CIOIN	H2XMA8_CIOIN	ENSCINP00000025681	ENSCINP00000030791	J domain-containing protein.	Uncharacterized protein.	0.464
F6SQY7_CIOIN	H2XRR7_CIOIN	ENSCINP00000025681	ENSCINP00000032351	J domain-containing protein.	J domain-containing protein.	0.797
F6SQY7_CIOIN	Hsp40	ENSCINP00000025681	ENSCINP00000002844	J domain-containing protein.	J domain-containing protein.	0.761
F6SQY7_CIOIN	LOC100183218	ENSCINP00000025681	ENSCINP00000029870	J domain-containing protein.	10 kDa heat shock protein, mitochondrial-like; Belongs to the GroES chaperonin family.	0.585
F6SQY7_CIOIN	LOC100185452	ENSCINP00000025681	ENSCINP00000013301	J domain-containing protein.	Uncharacterized protein.	0.465
F6SQY7_CIOIN	LOC100186653	ENSCINP00000025681	ENSCINP00000018243	J domain-containing protein.	dnaJ homolog subfamily A member 1-like.	0.911
F6SQY7_CIOIN	LOC100187058	ENSCINP00000025681	ENSCINP00000024337	J domain-containing protein.	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	0.615
F6SQY7_CIOIN	LOC100187265	ENSCINP00000025681	ENSCINP00000009399	J domain-containing protein.	Uncharacterized protein.	0.721
F6WTE3_CIOIN	F6SQY7_CIOIN	ENSCINP00000016022	ENSCINP00000025681	Uncharacterized protein; Belongs to the chaperonin (HSP60) family.	J domain-containing protein.	0.469
F6WTE3_CIOIN	LOC100175116	ENSCINP00000016022	ENSCINP00000006762	Uncharacterized protein; Belongs to the chaperonin (HSP60) family.	Uncharacterized protein LOC100175116 isoform X2.	0.469
F6WTE3_CIOIN	LOC100177909	ENSCINP00000016022	ENSCINP00000011275	Uncharacterized protein; Belongs to the chaperonin (HSP60) family.	Iron-sulfur cluster co-chaperone protein HscB, mitochondrial-like isoform X1.	0.661
F6WTE3_CIOIN	LOC100183218	ENSCINP00000016022	ENSCINP00000029870	Uncharacterized protein; Belongs to the chaperonin (HSP60) family.	10 kDa heat shock protein, mitochondrial-like; Belongs to the GroES chaperonin family.	0.998