(12 nodes) Centrosome duplication network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6YAQ4_CIOIN	Uncharacterized protein. (240 aa)
	F7AQD6_CIOIN	Uncharacterized protein. (1704 aa)
	LOC100185558	Dentin sialophosphoprotein-like isoform X1. (843 aa)
	F6Q1T1_CIOIN	Uncharacterized protein. (337 aa)
	F6ZJZ6_CIOIN	Uncharacterized protein. (1885 aa)
	LOC101242578	Caltractin. (170 aa)
	F6QAC7_CIOIN	ASH domain-containing protein. (437 aa)
	F6XLX0_CIOIN	Uncharacterized protein. (936 aa)
	LOC100182613	Uncharacterized protein. (507 aa)
	H2XWG8_CIOIN	Uncharacterized protein. (605 aa)
	H2Y0Y1_CIOIN	Uncharacterized protein. (227 aa)
	H2Y3U9_CIOIN	Uncharacterized protein. (281 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6Q1T1_CIOIN	F6XLX0_CIOIN	ENSCINP00000013334	ENSCINP00000026188	Uncharacterized protein.	Uncharacterized protein.	0.552
F6QAC7_CIOIN	F6XLX0_CIOIN	ENSCINP00000020451	ENSCINP00000026188	ASH domain-containing protein.	Uncharacterized protein.	0.934
F6QAC7_CIOIN	F6YAQ4_CIOIN	ENSCINP00000020451	ENSCINP00000014170	ASH domain-containing protein.	Uncharacterized protein.	0.524
F6QAC7_CIOIN	LOC100182613	ENSCINP00000020451	ENSCINP00000032227	ASH domain-containing protein.	Uncharacterized protein.	0.535
F6XLX0_CIOIN	F6Q1T1_CIOIN	ENSCINP00000026188	ENSCINP00000013334	Uncharacterized protein.	Uncharacterized protein.	0.552
F6XLX0_CIOIN	F6QAC7_CIOIN	ENSCINP00000026188	ENSCINP00000020451	Uncharacterized protein.	ASH domain-containing protein.	0.934
F6XLX0_CIOIN	F6YAQ4_CIOIN	ENSCINP00000026188	ENSCINP00000014170	Uncharacterized protein.	Uncharacterized protein.	0.928
F6XLX0_CIOIN	F6ZJZ6_CIOIN	ENSCINP00000026188	ENSCINP00000015580	Uncharacterized protein.	Uncharacterized protein.	0.570
F6XLX0_CIOIN	H2XWG8_CIOIN	ENSCINP00000026188	ENSCINP00000034002	Uncharacterized protein.	Uncharacterized protein.	0.406
F6XLX0_CIOIN	LOC100182613	ENSCINP00000026188	ENSCINP00000032227	Uncharacterized protein.	Uncharacterized protein.	0.688
F6XLX0_CIOIN	LOC100185558	ENSCINP00000026188	ENSCINP00000011624	Uncharacterized protein.	Dentin sialophosphoprotein-like isoform X1.	0.677
F6XLX0_CIOIN	LOC101242578	ENSCINP00000026188	ENSCINP00000018417	Uncharacterized protein.	Caltractin.	0.532
F6YAQ4_CIOIN	F6QAC7_CIOIN	ENSCINP00000014170	ENSCINP00000020451	Uncharacterized protein.	ASH domain-containing protein.	0.524
F6YAQ4_CIOIN	F6XLX0_CIOIN	ENSCINP00000014170	ENSCINP00000026188	Uncharacterized protein.	Uncharacterized protein.	0.928
F6YAQ4_CIOIN	LOC100182613	ENSCINP00000014170	ENSCINP00000032227	Uncharacterized protein.	Uncharacterized protein.	0.747
F6ZJZ6_CIOIN	F6XLX0_CIOIN	ENSCINP00000015580	ENSCINP00000026188	Uncharacterized protein.	Uncharacterized protein.	0.570
H2XWG8_CIOIN	F6XLX0_CIOIN	ENSCINP00000034002	ENSCINP00000026188	Uncharacterized protein.	Uncharacterized protein.	0.406
H2Y3U9_CIOIN	LOC101242578	ENSCINP00000036585	ENSCINP00000018417	Uncharacterized protein.	Caltractin.	0.521
LOC100182613	F6QAC7_CIOIN	ENSCINP00000032227	ENSCINP00000020451	Uncharacterized protein.	ASH domain-containing protein.	0.535
LOC100182613	F6XLX0_CIOIN	ENSCINP00000032227	ENSCINP00000026188	Uncharacterized protein.	Uncharacterized protein.	0.688