(9 nodes) Maintenance of protein location in nucleus network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2XN19_CIOIN	ARL2_Bind_BART domain-containing protein. (156 aa)
	LOC100178355	ADP-ribosylation factor-like protein 2; Belongs to the small GTPase superfamily. Arf family. (184 aa)
	LOC100181289	Cyclin-dependent-like kinase 5; Belongs to the protein kinase superfamily. (292 aa)
	F6WBK6_CIOIN	TPR_REGION domain-containing protein. (446 aa)
	F6PK54_CIOIN	Uncharacterized protein. (331 aa)
	zf(u1like)-11	Matrin-type domain-containing protein. (640 aa)
	F6UE50_CIOIN	BTP domain-containing protein. (671 aa)
	LOC100177564	Uncharacterized protein. (181 aa)
	H2XQB7_CIOIN	PHD-type domain-containing protein. (164 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6UE50_CIOIN	H2XQB7_CIOIN	ENSCINP00000005505	ENSCINP00000031851	BTP domain-containing protein.	PHD-type domain-containing protein.	0.540
H2XN19_CIOIN	LOC100178355	ENSCINP00000031052	ENSCINP00000032218	ARL2_Bind_BART domain-containing protein.	ADP-ribosylation factor-like protein 2; Belongs to the small GTPase superfamily. Arf family.	0.966
H2XQB7_CIOIN	F6UE50_CIOIN	ENSCINP00000031851	ENSCINP00000005505	PHD-type domain-containing protein.	BTP domain-containing protein.	0.540
LOC100178355	H2XN19_CIOIN	ENSCINP00000032218	ENSCINP00000031052	ADP-ribosylation factor-like protein 2; Belongs to the small GTPase superfamily. Arf family.	ARL2_Bind_BART domain-containing protein.	0.966