(12 nodes) Nucleus localization network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6UAC6_CIOIN	Calponin-homology (CH) domain-containing protein. (217 aa)
	F6S0E6_CIOIN	Uncharacterized protein. (1113 aa)
	H2XK78_CIOIN	Uncharacterized protein. (147 aa)
	H2XM17_CIOIN	FAT domain-containing protein. (187 aa)
	H2XNX7_CIOIN	PCM1_C domain-containing protein. (324 aa)
	H2XPY4_CIOIN	Uncharacterized protein. (95 aa)
	H2XWT8_CIOIN	Uncharacterized protein. (206 aa)
	H2Y066_CIOIN	Uncharacterized protein. (361 aa)
	H2Y224_CIOIN	FAM193_C domain-containing protein. (180 aa)
	LOC100176656	lamin-L(II)-like isoform X1; Belongs to the intermediate filament family. (465 aa)
	F6VK85_CIOIN	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (754 aa)
	F7B690_CIOIN	CAP-Gly domain-containing protein. (1092 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6S0E6_CIOIN	F6UAC6_CIOIN	ENSCINP00000022381	ENSCINP00000021422	Uncharacterized protein.	Calponin-homology (CH) domain-containing protein.	0.900
F6S0E6_CIOIN	LOC100176656	ENSCINP00000022381	ENSCINP00000001638	Uncharacterized protein.	lamin-L(II)-like isoform X1; Belongs to the intermediate filament family.	0.430
F6UAC6_CIOIN	F6S0E6_CIOIN	ENSCINP00000021422	ENSCINP00000022381	Calponin-homology (CH) domain-containing protein.	Uncharacterized protein.	0.900
F6UAC6_CIOIN	LOC100176656	ENSCINP00000021422	ENSCINP00000001638	Calponin-homology (CH) domain-containing protein.	lamin-L(II)-like isoform X1; Belongs to the intermediate filament family.	0.430
F6VK85_CIOIN	H2XM17_CIOIN	ENSCINP00000002868	ENSCINP00000030699	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	FAT domain-containing protein.	0.943
F6VK85_CIOIN	H2XWT8_CIOIN	ENSCINP00000002868	ENSCINP00000034122	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.925
F6VK85_CIOIN	H2Y066_CIOIN	ENSCINP00000002868	ENSCINP00000035300	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.929
H2XM17_CIOIN	F6VK85_CIOIN	ENSCINP00000030699	ENSCINP00000002868	FAT domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.943
H2XM17_CIOIN	H2XWT8_CIOIN	ENSCINP00000030699	ENSCINP00000034122	FAT domain-containing protein.	Uncharacterized protein.	0.920
H2XM17_CIOIN	H2Y066_CIOIN	ENSCINP00000030699	ENSCINP00000035300	FAT domain-containing protein.	Uncharacterized protein.	0.964
H2XWT8_CIOIN	F6VK85_CIOIN	ENSCINP00000034122	ENSCINP00000002868	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.925
H2XWT8_CIOIN	H2XM17_CIOIN	ENSCINP00000034122	ENSCINP00000030699	Uncharacterized protein.	FAT domain-containing protein.	0.920
H2XWT8_CIOIN	H2Y066_CIOIN	ENSCINP00000034122	ENSCINP00000035300	Uncharacterized protein.	Uncharacterized protein.	0.949
H2Y066_CIOIN	F6VK85_CIOIN	ENSCINP00000035300	ENSCINP00000002868	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.929
H2Y066_CIOIN	H2XM17_CIOIN	ENSCINP00000035300	ENSCINP00000030699	Uncharacterized protein.	FAT domain-containing protein.	0.964
H2Y066_CIOIN	H2XWT8_CIOIN	ENSCINP00000035300	ENSCINP00000034122	Uncharacterized protein.	Uncharacterized protein.	0.949
LOC100176656	F6S0E6_CIOIN	ENSCINP00000001638	ENSCINP00000022381	lamin-L(II)-like isoform X1; Belongs to the intermediate filament family.	Uncharacterized protein.	0.430
LOC100176656	F6UAC6_CIOIN	ENSCINP00000001638	ENSCINP00000021422	lamin-L(II)-like isoform X1; Belongs to the intermediate filament family.	Calponin-homology (CH) domain-containing protein.	0.430