(9 nodes) G-quadruplex DNA binding network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F6SXK5_CIOIN	Uncharacterized protein. (504 aa)
	F6RZ99_CIOIN	Zinc-hook domain-containing protein. (477 aa)
	F6RYY5_CIOIN	AAA_23 domain-containing protein. (400 aa)
	F6W6K0_CIOIN	Uncharacterized protein. (534 aa)
	LOC100179894	Werner syndrome ATP-dependent helicase homolog isoform X1. (1194 aa)
	PIF1	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability. (607 aa)
	F6Z5E6_CIOIN	Lon protease homolog, mitochondrial; ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial DNA in a site-specific manner; Belongs to the peptidase S16 family. ECO:0000256\|PROSITE-. (844 aa)
	H2XNU2_CIOIN	Uncharacterized protein. (214 aa)
	H2XXZ2_CIOIN	XRN1_D2_D3 domain-containing protein. (149 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6RYY5_CIOIN	F6RZ99_CIOIN	ENSCINP00000003245	ENSCINP00000003235	AAA_23 domain-containing protein.	Zinc-hook domain-containing protein.	0.900
F6RYY5_CIOIN	H2XNU2_CIOIN	ENSCINP00000003245	ENSCINP00000031325	AAA_23 domain-containing protein.	Uncharacterized protein.	0.971
F6RYY5_CIOIN	LOC100179894	ENSCINP00000003245	ENSCINP00000004562	AAA_23 domain-containing protein.	Werner syndrome ATP-dependent helicase homolog isoform X1.	0.940
F6RYY5_CIOIN	PIF1	ENSCINP00000003245	ENSCINP00000005776	AAA_23 domain-containing protein.	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.	0.546
F6RZ99_CIOIN	F6RYY5_CIOIN	ENSCINP00000003235	ENSCINP00000003245	Zinc-hook domain-containing protein.	AAA_23 domain-containing protein.	0.900
F6RZ99_CIOIN	H2XNU2_CIOIN	ENSCINP00000003235	ENSCINP00000031325	Zinc-hook domain-containing protein.	Uncharacterized protein.	0.900
F6RZ99_CIOIN	LOC100179894	ENSCINP00000003235	ENSCINP00000004562	Zinc-hook domain-containing protein.	Werner syndrome ATP-dependent helicase homolog isoform X1.	0.940
F6RZ99_CIOIN	PIF1	ENSCINP00000003235	ENSCINP00000005776	Zinc-hook domain-containing protein.	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.	0.546
F6SXK5_CIOIN	H2XXZ2_CIOIN	ENSCINP00000002604	ENSCINP00000034526	Uncharacterized protein.	XRN1_D2_D3 domain-containing protein.	0.519
H2XNU2_CIOIN	F6RYY5_CIOIN	ENSCINP00000031325	ENSCINP00000003245	Uncharacterized protein.	AAA_23 domain-containing protein.	0.971
H2XNU2_CIOIN	F6RZ99_CIOIN	ENSCINP00000031325	ENSCINP00000003235	Uncharacterized protein.	Zinc-hook domain-containing protein.	0.900
H2XNU2_CIOIN	LOC100179894	ENSCINP00000031325	ENSCINP00000004562	Uncharacterized protein.	Werner syndrome ATP-dependent helicase homolog isoform X1.	0.940
H2XNU2_CIOIN	PIF1	ENSCINP00000031325	ENSCINP00000005776	Uncharacterized protein.	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.	0.546
H2XXZ2_CIOIN	F6SXK5_CIOIN	ENSCINP00000034526	ENSCINP00000002604	XRN1_D2_D3 domain-containing protein.	Uncharacterized protein.	0.519
LOC100179894	F6RYY5_CIOIN	ENSCINP00000004562	ENSCINP00000003245	Werner syndrome ATP-dependent helicase homolog isoform X1.	AAA_23 domain-containing protein.	0.940
LOC100179894	F6RZ99_CIOIN	ENSCINP00000004562	ENSCINP00000003235	Werner syndrome ATP-dependent helicase homolog isoform X1.	Zinc-hook domain-containing protein.	0.940
LOC100179894	H2XNU2_CIOIN	ENSCINP00000004562	ENSCINP00000031325	Werner syndrome ATP-dependent helicase homolog isoform X1.	Uncharacterized protein.	0.940
LOC100179894	PIF1	ENSCINP00000004562	ENSCINP00000005776	Werner syndrome ATP-dependent helicase homolog isoform X1.	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.	0.777
PIF1	F6RYY5_CIOIN	ENSCINP00000005776	ENSCINP00000003245	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.	AAA_23 domain-containing protein.	0.546
PIF1	F6RZ99_CIOIN	ENSCINP00000005776	ENSCINP00000003235	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.	Zinc-hook domain-containing protein.	0.546