(78 nodes) Cilium-dependent cell motility network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC778840	WD_REPEATS_REGION domain-containing protein. (661 aa)
	F6ZGS0_CIOIN	TMF_TATA_bd domain-containing protein. (317 aa)
	F6VRS6_CIOIN	WD_REPEATS_REGION domain-containing protein. (882 aa)
	F6SXJ8_CIOIN	Uncharacterized protein. (100 aa)
	F6U4Y8_CIOIN	Uncharacterized protein. (231 aa)
	LOC100184593	Sorbitol dehydrogenase. (360 aa)
	F6X1K6_CIOIN	Uncharacterized protein. (339 aa)
	LOC100186452	Tektin-1-like. (402 aa)
	LOC100180066	Sodium/hydrogen exchanger 9B2-like. (535 aa)
	F6XIK1_CIOIN	Uncharacterized protein. (377 aa)
	LOC100182630	Intraflagellar transport protein 81 homolog. (679 aa)
	LOC100182123	GAS domain-containing protein. (363 aa)
	LOC100177142	Cation channel sperm-associated protein 2-like. (586 aa)
	LOC100178239	Uncharacterized protein CFAP97D2-like. (191 aa)
	F6U441_CIOIN	Uncharacterized protein. (1638 aa)
	LOC100177721	WD_REPEATS_REGION domain-containing protein. (620 aa)
	tektinA1	Uncharacterized protein. (447 aa)
	efhc2	EFHC2 protein. (741 aa)
	F6Q427_CIOIN	Uncharacterized protein. (897 aa)
	LOC100185665	Cilia- and flagella-associated protein 157. (519 aa)
	F7A7P7_CIOIN	Enkurin domain-containing protein. (258 aa)
	F6XBA5_CIOIN	Uncharacterized protein. (497 aa)
	LOC100178966	Uncharacterized protein. (630 aa)
	tektinB1	Tektin B1. (435 aa)
	ci-rsp4/6	Radial spoke protein RSP4/6. (527 aa)
	F6YNH3_CIOIN	NYD-SP28 domain-containing protein. (541 aa)
	F6YMF0_CIOIN	Uncharacterized protein. (348 aa)
	LOC100178079	Sperm-associated antigen 16 protein. (606 aa)
	F6WXB6_CIOIN	Na_H_Exchanger domain-containing protein. (462 aa)
	F6RAI3_CIOIN	Uncharacterized protein. (172 aa)
	F7ADW3_CIOIN	Uncharacterized protein. (990 aa)
	F7ADV8_CIOIN	Uncharacterized protein. (648 aa)
	F6SP61_CIOIN	Ion_trans domain-containing protein. (414 aa)
	LOC100181439	Leucine zipper transcription factor-like protein 1. (294 aa)
	F6UHX8_CIOIN	Uncharacterized protein. (177 aa)
	LOC100187286	Uncharacterized protein. (874 aa)
	LOC100184287	Uncharacterized protein. (902 aa)
	F7ABC5_CIOIN	Uncharacterized protein. (238 aa)
	F7ABA1_CIOIN	Uncharacterized protein. (182 aa)
	F6U1V3_CIOIN	Uncharacterized protein. (1398 aa)
	F6RLP1_CIOIN	Uncharacterized protein. (546 aa)
	Ic4	Uncharacterized protein. (550 aa)
	F6T5L0_CIOIN	Uncharacterized protein. (343 aa)
	F6YY79_CIOIN	Uncharacterized protein. (478 aa)
	LOC100184123	Bardet-Biedl syndrome 2 protein homolog. (708 aa)
	F6XAX3_CIOIN	Uncharacterized protein. (150 aa)
	Pf16	Uncharacterized protein. (171 aa)
	F6UMX9_CIOIN	Uncharacterized protein. (425 aa)
	F7AZM4_CIOIN	Uncharacterized protein. (161 aa)
	ci-rsp9	Radial spoke protein Ci-RSP9. (276 aa)
	LOC100186620	MFS domain-containing protein. (511 aa)
	F6W5C2_CIOIN	Uncharacterized protein. (776 aa)
	F6X1M5_CIOIN	Uncharacterized protein. (242 aa)
	LOC100186562	Uncharacterized protein. (468 aa)
	H2XJR4_CIOIN	Uncharacterized protein. (241 aa)
	H2XKM9_CIOIN	Uncharacterized protein. (182 aa)
	LOC100177768	Protein DPCD. (207 aa)
	H2XMH5_CIOIN	Uncharacterized protein. (293 aa)
	H2XMJ3_CIOIN	Uncharacterized protein. (346 aa)
	LOC100183571	Uncharacterized protein CFAP97D1-like. (207 aa)
	H2XSS3_CIOIN	Uncharacterized protein. (95 aa)
	H2XSX2_CIOIN	TPR_REGION domain-containing protein. (258 aa)
	H2XT39_CIOIN	Uncharacterized protein. (494 aa)
	H2XTY2_CIOIN	Uncharacterized protein. (882 aa)
	H2XX53_CIOIN	Uncharacterized protein. (436 aa)
	H2XXG9_CIOIN	MFS domain-containing protein. (593 aa)
	H2XY06_CIOIN	Uncharacterized protein. (844 aa)
	H2XY49_CIOIN	PIH1 domain-containing protein. (121 aa)
	H2XYB7_CIOIN	WD_REPEATS_REGION domain-containing protein. (220 aa)
	LOC100180914	Testis-expressed protein 43-like isoform X1. (122 aa)
	H2Y085_CIOIN	Uncharacterized protein. (155 aa)
	H2Y0L3_CIOIN	Uncharacterized protein. (1239 aa)
	H2Y1K2_CIOIN	Uncharacterized protein. (566 aa)
	H2Y212_CIOIN	MFS domain-containing protein. (459 aa)
	H2Y2C9_CIOIN	Uncharacterized protein. (239 aa)
	LOC100177874	Dynein regulatory complex subunit 2 isoform X2. (500 aa)
	H2Y381_CIOIN	NYD-SP28_assoc domain-containing protein. (65 aa)
	H2Y3A3_CIOIN	Uncharacterized protein. (817 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6Q427_CIOIN	F6W5C2_CIOIN	ENSCINP00000013016	ENSCINP00000028061	Uncharacterized protein.	Uncharacterized protein.	0.456
F6RLP1_CIOIN	F6UMX9_CIOIN	ENSCINP00000023931	ENSCINP00000025942	Uncharacterized protein.	Uncharacterized protein.	0.475
F6RLP1_CIOIN	F6XBA5_CIOIN	ENSCINP00000023931	ENSCINP00000013874	Uncharacterized protein.	Uncharacterized protein.	0.656
F6RLP1_CIOIN	F7A7P7_CIOIN	ENSCINP00000023931	ENSCINP00000013781	Uncharacterized protein.	Enkurin domain-containing protein.	0.615
F6RLP1_CIOIN	H2XT39_CIOIN	ENSCINP00000023931	ENSCINP00000032823	Uncharacterized protein.	Uncharacterized protein.	0.615
F6RLP1_CIOIN	H2XY06_CIOIN	ENSCINP00000023931	ENSCINP00000034540	Uncharacterized protein.	Uncharacterized protein.	0.483
F6RLP1_CIOIN	Ic4	ENSCINP00000023931	ENSCINP00000023965	Uncharacterized protein.	Uncharacterized protein.	0.476
F6RLP1_CIOIN	LOC100177721	ENSCINP00000023931	ENSCINP00000011659	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.755
F6RLP1_CIOIN	LOC100186452	ENSCINP00000023931	ENSCINP00000005668	Uncharacterized protein.	Tektin-1-like.	0.508
F6RLP1_CIOIN	Pf16	ENSCINP00000023931	ENSCINP00000025941	Uncharacterized protein.	Uncharacterized protein.	0.475
F6RLP1_CIOIN	efhc2	ENSCINP00000023931	ENSCINP00000012720	Uncharacterized protein.	EFHC2 protein.	0.625
F6RLP1_CIOIN	tektinA1	ENSCINP00000023931	ENSCINP00000011665	Uncharacterized protein.	Uncharacterized protein.	0.508
F6RLP1_CIOIN	tektinB1	ENSCINP00000023931	ENSCINP00000015193	Uncharacterized protein.	Tektin B1.	0.677
F6SP61_CIOIN	H2Y085_CIOIN	ENSCINP00000022059	ENSCINP00000035319	Ion_trans domain-containing protein.	Uncharacterized protein.	0.925
F6SP61_CIOIN	LOC100177142	ENSCINP00000022059	ENSCINP00000009347	Ion_trans domain-containing protein.	Cation channel sperm-associated protein 2-like.	0.961
F6SXJ8_CIOIN	F6UMX9_CIOIN	ENSCINP00000002607	ENSCINP00000025942	Uncharacterized protein.	Uncharacterized protein.	0.410
F6SXJ8_CIOIN	Pf16	ENSCINP00000002607	ENSCINP00000025941	Uncharacterized protein.	Uncharacterized protein.	0.410
F6SXJ8_CIOIN	tektinB1	ENSCINP00000002607	ENSCINP00000015193	Uncharacterized protein.	Tektin B1.	0.492
F6T5L0_CIOIN	LOC778840	ENSCINP00000024101	ENSCINP00000017986	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.499
F6U441_CIOIN	F6VRS6_CIOIN	ENSCINP00000011569	ENSCINP00000000671	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.474