(15 nodes) Regulation of dendritic spine development network (Ciona intestinalis)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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Others

textmining

co-expression

protein homology

Your Input:
	rngi	Caprin-1_dimer domain-containing protein. (703 aa)
	LOC100183765	Protein LLP homolog. (132 aa)
	erk3/4	Protein kinase domain-containing protein. (906 aa)
	F6W6K0_CIOIN	Uncharacterized protein. (534 aa)
	F6RYH5_CIOIN	Uncharacterized protein. (814 aa)
	LOC104266814	ADP-ribosylation factor 6-like; Belongs to the small GTPase superfamily. Arf family. (174 aa)
	F6WQ08_CIOIN	Protein kinase domain-containing protein. (473 aa)
	F6ZFJ9_CIOIN	Alpha-type protein kinase domain-containing protein. (678 aa)
	F6XVY9_CIOIN	HECT domain-containing protein. (862 aa)
	F7BJQ5_CIOIN	ANK_REP_REGION domain-containing protein. (133 aa)
	H2XPL3_CIOIN	Uncharacterized protein. (434 aa)
	H2XRP4_CIOIN	Uncharacterized protein. (126 aa)
	H2XT32_CIOIN	Uncharacterized protein. (127 aa)
	H2Y0V6_CIOIN	Uncharacterized protein. (204 aa)
	LOC100185836	ADP-ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family. (196 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6RYH5_CIOIN	F7BJQ5_CIOIN	ENSCINP00000008326	ENSCINP00000021185	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.644
F6WQ08_CIOIN	erk3/4	ENSCINP00000011785	ENSCINP00000002522	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.893
F6XVY9_CIOIN	erk3/4	ENSCINP00000015365	ENSCINP00000002522	HECT domain-containing protein.	Protein kinase domain-containing protein.	0.492
F7BJQ5_CIOIN	F6RYH5_CIOIN	ENSCINP00000021185	ENSCINP00000008326	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.644
F7BJQ5_CIOIN	LOC100185836	ENSCINP00000021185	ENSCINP00000035700	ANK_REP_REGION domain-containing protein.	ADP-ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	0.460
F7BJQ5_CIOIN	LOC104266814	ENSCINP00000021185	ENSCINP00000009452	ANK_REP_REGION domain-containing protein.	ADP-ribosylation factor 6-like; Belongs to the small GTPase superfamily. Arf family.	0.460
H2XRP4_CIOIN	H2XT32_CIOIN	ENSCINP00000032328	ENSCINP00000032816	Uncharacterized protein.	Uncharacterized protein.	0.535
H2XT32_CIOIN	H2XRP4_CIOIN	ENSCINP00000032816	ENSCINP00000032328	Uncharacterized protein.	Uncharacterized protein.	0.535
H2XT32_CIOIN	H2Y0V6_CIOIN	ENSCINP00000032816	ENSCINP00000035540	Uncharacterized protein.	Uncharacterized protein.	0.528
H2Y0V6_CIOIN	H2XT32_CIOIN	ENSCINP00000035540	ENSCINP00000032816	Uncharacterized protein.	Uncharacterized protein.	0.528
LOC100185836	F7BJQ5_CIOIN	ENSCINP00000035700	ENSCINP00000021185	ADP-ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	ANK_REP_REGION domain-containing protein.	0.460
LOC100185836	LOC104266814	ENSCINP00000035700	ENSCINP00000009452	ADP-ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	ADP-ribosylation factor 6-like; Belongs to the small GTPase superfamily. Arf family.	0.903
LOC104266814	F7BJQ5_CIOIN	ENSCINP00000009452	ENSCINP00000021185	ADP-ribosylation factor 6-like; Belongs to the small GTPase superfamily. Arf family.	ANK_REP_REGION domain-containing protein.	0.460
LOC104266814	LOC100185836	ENSCINP00000009452	ENSCINP00000035700	ADP-ribosylation factor 6-like; Belongs to the small GTPase superfamily. Arf family.	ADP-ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	0.903
erk3/4	F6WQ08_CIOIN	ENSCINP00000002522	ENSCINP00000011785	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.893
erk3/4	F6XVY9_CIOIN	ENSCINP00000002522	ENSCINP00000015365	Protein kinase domain-containing protein.	HECT domain-containing protein.	0.492