(31 nodes) Axonemal dynein complex assembly network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100183546	Dynein assembly factor 1, axonemal homolog. (628 aa)
	tektinB1	Tektin B1. (435 aa)
	calx	Calaxin. (203 aa)
	F6YNH3_CIOIN	NYD-SP28 domain-containing protein. (541 aa)
	LOC100179722	Uncharacterized protein. (526 aa)
	LOC778840	WD_REPEATS_REGION domain-containing protein. (661 aa)
	F6SXQ6_CIOIN	Uncharacterized protein. (1041 aa)
	F7ABC5_CIOIN	Uncharacterized protein. (238 aa)
	F7ABA1_CIOIN	Uncharacterized protein. (182 aa)
	Ic4	Uncharacterized protein. (550 aa)
	F6YY79_CIOIN	Uncharacterized protein. (478 aa)
	F6PWA8_CIOIN	Uncharacterized protein. (284 aa)
	F7AZM4_CIOIN	Uncharacterized protein. (161 aa)
	F6VYZ5_CIOIN	WD_REPEATS_REGION domain-containing protein. (778 aa)
	H2XR49_CIOIN	Uncharacterized protein. (907 aa)
	ekn1	EKN1 protein. (434 aa)
	H2XSX2_CIOIN	TPR_REGION domain-containing protein. (258 aa)
	LOC100175445	Uncharacterized protein. (864 aa)
	LOC100184834	Cilia- and flagella-associated protein 100-like. (580 aa)
	H2XY49_CIOIN	PIH1 domain-containing protein. (121 aa)
	H2Y1I4_CIOIN	WD_REPEATS_REGION domain-containing protein. (356 aa)
	LOC100177874	Dynein regulatory complex subunit 2 isoform X2. (500 aa)
	H2Y381_CIOIN	NYD-SP28_assoc domain-containing protein. (65 aa)
	ic5	DC2-related axonemal dynein intermediate chain 5. (548 aa)
	LOC100186702	Dynein assembly factor 3, axonemal. (460 aa)
	F6RF92_CIOIN	DUF4200 domain-containing protein. (561 aa)
	dnal1	Dynein light chain 1, axonemal; Part of the multisubunit axonemal ATPase complexes that generate the force for cilia motility and govern beat frequency (By similarity). Component of the outer arm dynein (ODA). May be involved in a mechanosensory feedback mechanism controlling ODA activity based on external conformational cues by tethering the outer arm dynein heavy chain (DNAH5) to the microtubule within the axoneme (By similarity). (190 aa)
	LOC100177605	Uncharacterized protein. (847 aa)
	LOC100177840	MYND-type domain-containing protein. (433 aa)
	ciaxp66.0	Uncharacterized protein. (575 aa)
	Ic1	Uncharacterized protein. (594 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6RF92_CIOIN	LOC100186702	ENSCINP00000009918	ENSCINP00000002747	DUF4200 domain-containing protein.	Dynein assembly factor 3, axonemal.	0.424
F6SXQ6_CIOIN	F6YY79_CIOIN	ENSCINP00000019488	ENSCINP00000024246	Uncharacterized protein.	Uncharacterized protein.	0.500
F6SXQ6_CIOIN	F7ABA1_CIOIN	ENSCINP00000019488	ENSCINP00000023083	Uncharacterized protein.	Uncharacterized protein.	0.424
F6SXQ6_CIOIN	F7ABC5_CIOIN	ENSCINP00000019488	ENSCINP00000023080	Uncharacterized protein.	Uncharacterized protein.	0.424
F6SXQ6_CIOIN	H2XR49_CIOIN	ENSCINP00000019488	ENSCINP00000032133	Uncharacterized protein.	Uncharacterized protein.	0.448
F6SXQ6_CIOIN	Ic1	ENSCINP00000019488	ENSCINP00000014437	Uncharacterized protein.	Uncharacterized protein.	0.521
F6SXQ6_CIOIN	Ic4	ENSCINP00000019488	ENSCINP00000023965	Uncharacterized protein.	Uncharacterized protein.	0.783
F6SXQ6_CIOIN	LOC100175445	ENSCINP00000019488	ENSCINP00000033355	Uncharacterized protein.	Uncharacterized protein.	0.530
F6SXQ6_CIOIN	LOC100177605	ENSCINP00000019488	ENSCINP00000013329	Uncharacterized protein.	Uncharacterized protein.	0.487
F6SXQ6_CIOIN	LOC100177840	ENSCINP00000019488	ENSCINP00000013918	Uncharacterized protein.	MYND-type domain-containing protein.	0.550
F6SXQ6_CIOIN	LOC100177874	ENSCINP00000019488	ENSCINP00000036262	Uncharacterized protein.	Dynein regulatory complex subunit 2 isoform X2.	0.563
F6SXQ6_CIOIN	LOC100179722	ENSCINP00000019488	ENSCINP00000017116	Uncharacterized protein.	Uncharacterized protein.	0.764
F6SXQ6_CIOIN	LOC778840	ENSCINP00000019488	ENSCINP00000017986	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.407
F6SXQ6_CIOIN	calx	ENSCINP00000019488	ENSCINP00000015983	Uncharacterized protein.	Calaxin.	0.761
F6SXQ6_CIOIN	ciaxp66.0	ENSCINP00000019488	ENSCINP00000014350	Uncharacterized protein.	Uncharacterized protein.	0.655
F6SXQ6_CIOIN	ic5	ENSCINP00000019488	ENSCINP00000000847	Uncharacterized protein.	DC2-related axonemal dynein intermediate chain 5.	0.655
F6SXQ6_CIOIN	tektinB1	ENSCINP00000019488	ENSCINP00000015193	Uncharacterized protein.	Tektin B1.	0.563
F6VYZ5_CIOIN	Ic1	ENSCINP00000015129	ENSCINP00000014437	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.544
F6VYZ5_CIOIN	LOC100177874	ENSCINP00000015129	ENSCINP00000036262	WD_REPEATS_REGION domain-containing protein.	Dynein regulatory complex subunit 2 isoform X2.	0.446
F6VYZ5_CIOIN	LOC778840	ENSCINP00000015129	ENSCINP00000017986	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.540