(7 nodes) Nonhomologous end joining complex network (Ciona intestinalis)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	zf(c2h2)-102	ATP-dependent DNA helicase II subunit 2; Single-stranded DNA-dependent ATP-dependent helicase. (706 aa)
	F6UX10_CIOIN	DNA_LIGASE_A3 domain-containing protein; Belongs to the ATP-dependent DNA ligase family. (655 aa)
	F7A9P4_CIOIN	NUC194 domain-containing protein. (726 aa)
	H2Y3C6_CIOIN	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (540 aa)
	H2Y3M4_CIOIN	Uncharacterized protein. (185 aa)
	LOC100177452	Uncharacterized protein. (603 aa)
	LOC100185732	DRMBL domain-containing protein. (277 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6UX10_CIOIN	F7A9P4_CIOIN	ENSCINP00000019410	ENSCINP00000023638	DNA_LIGASE_A3 domain-containing protein; Belongs to the ATP-dependent DNA ligase family.	NUC194 domain-containing protein.	0.824
F6UX10_CIOIN	H2Y3C6_CIOIN	ENSCINP00000019410	ENSCINP00000036411	DNA_LIGASE_A3 domain-containing protein; Belongs to the ATP-dependent DNA ligase family.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.824
F6UX10_CIOIN	H2Y3M4_CIOIN	ENSCINP00000019410	ENSCINP00000036509	DNA_LIGASE_A3 domain-containing protein; Belongs to the ATP-dependent DNA ligase family.	Uncharacterized protein.	0.752
F6UX10_CIOIN	LOC100177452	ENSCINP00000019410	ENSCINP00000001166	DNA_LIGASE_A3 domain-containing protein; Belongs to the ATP-dependent DNA ligase family.	Uncharacterized protein.	0.973
F6UX10_CIOIN	LOC100185732	ENSCINP00000019410	ENSCINP00000008060	DNA_LIGASE_A3 domain-containing protein; Belongs to the ATP-dependent DNA ligase family.	DRMBL domain-containing protein.	0.848
F6UX10_CIOIN	zf(c2h2)-102	ENSCINP00000019410	ENSCINP00000009339	DNA_LIGASE_A3 domain-containing protein; Belongs to the ATP-dependent DNA ligase family.	ATP-dependent DNA helicase II subunit 2; Single-stranded DNA-dependent ATP-dependent helicase.	0.975
F7A9P4_CIOIN	F6UX10_CIOIN	ENSCINP00000023638	ENSCINP00000019410	NUC194 domain-containing protein.	DNA_LIGASE_A3 domain-containing protein; Belongs to the ATP-dependent DNA ligase family.	0.824
F7A9P4_CIOIN	H2Y3C6_CIOIN	ENSCINP00000023638	ENSCINP00000036411	NUC194 domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.945
F7A9P4_CIOIN	H2Y3M4_CIOIN	ENSCINP00000023638	ENSCINP00000036509	NUC194 domain-containing protein.	Uncharacterized protein.	0.900
F7A9P4_CIOIN	LOC100177452	ENSCINP00000023638	ENSCINP00000001166	NUC194 domain-containing protein.	Uncharacterized protein.	0.904
F7A9P4_CIOIN	LOC100185732	ENSCINP00000023638	ENSCINP00000008060	NUC194 domain-containing protein.	DRMBL domain-containing protein.	0.903
F7A9P4_CIOIN	zf(c2h2)-102	ENSCINP00000023638	ENSCINP00000009339	NUC194 domain-containing protein.	ATP-dependent DNA helicase II subunit 2; Single-stranded DNA-dependent ATP-dependent helicase.	0.920
H2Y3C6_CIOIN	F6UX10_CIOIN	ENSCINP00000036411	ENSCINP00000019410	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	DNA_LIGASE_A3 domain-containing protein; Belongs to the ATP-dependent DNA ligase family.	0.824
H2Y3C6_CIOIN	F7A9P4_CIOIN	ENSCINP00000036411	ENSCINP00000023638	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	NUC194 domain-containing protein.	0.945
H2Y3C6_CIOIN	LOC100177452	ENSCINP00000036411	ENSCINP00000001166	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.904
H2Y3C6_CIOIN	LOC100185732	ENSCINP00000036411	ENSCINP00000008060	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	DRMBL domain-containing protein.	0.903
H2Y3C6_CIOIN	zf(c2h2)-102	ENSCINP00000036411	ENSCINP00000009339	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	ATP-dependent DNA helicase II subunit 2; Single-stranded DNA-dependent ATP-dependent helicase.	0.920
H2Y3M4_CIOIN	F6UX10_CIOIN	ENSCINP00000036509	ENSCINP00000019410	Uncharacterized protein.	DNA_LIGASE_A3 domain-containing protein; Belongs to the ATP-dependent DNA ligase family.	0.752
H2Y3M4_CIOIN	F7A9P4_CIOIN	ENSCINP00000036509	ENSCINP00000023638	Uncharacterized protein.	NUC194 domain-containing protein.	0.900
H2Y3M4_CIOIN	LOC100177452	ENSCINP00000036509	ENSCINP00000001166	Uncharacterized protein.	Uncharacterized protein.	0.842