(13 nodes) Protein K63-linked deubiquitination network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Zf(rbz)-3	Uncharacterized protein. (687 aa)
	F7A912_CIOIN	Uncharacterized protein; Belongs to the peptidase C19 family. (1072 aa)
	LOC100187208	OTU domain-containing protein 5. (592 aa)
	F6WPB7_CIOIN	BRCC36_C domain-containing protein. (108 aa)
	F7AAB5_CIOIN	Uncharacterized protein. (224 aa)
	F6YGJ7_CIOIN	Uncharacterized protein; Belongs to the peptidase C19 family. (1099 aa)
	H2Y2N2_CIOIN	MPN domain-containing protein. (423 aa)
	H2XLY1_CIOIN	Uncharacterized protein. (292 aa)
	LOC100179683	26S proteasome non-ATPase regulatory subunit 14. (310 aa)
	F6ZBN8_CIOIN	CAP-Gly domain-containing protein. (292 aa)
	F7AA12_CIOIN	USP domain-containing protein; Belongs to the peptidase C19 family. (92 aa)
	LOC100178793	OTU domain-containing protein. (296 aa)
	F6PHM0_CIOIN	Uncharacterized protein. (498 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6WPB7_CIOIN	H2XLY1_CIOIN	ENSCINP00000009483	ENSCINP00000030663	BRCC36_C domain-containing protein.	Uncharacterized protein.	0.999
F6YGJ7_CIOIN	F7A912_CIOIN	ENSCINP00000008727	ENSCINP00000023650	Uncharacterized protein; Belongs to the peptidase C19 family.	Uncharacterized protein; Belongs to the peptidase C19 family.	0.509
F7A912_CIOIN	F6YGJ7_CIOIN	ENSCINP00000023650	ENSCINP00000008727	Uncharacterized protein; Belongs to the peptidase C19 family.	Uncharacterized protein; Belongs to the peptidase C19 family.	0.509
F7A912_CIOIN	H2Y2N2_CIOIN	ENSCINP00000023650	ENSCINP00000036167	Uncharacterized protein; Belongs to the peptidase C19 family.	MPN domain-containing protein.	0.559
F7AA12_CIOIN	H2Y2N2_CIOIN	ENSCINP00000004248	ENSCINP00000036167	USP domain-containing protein; Belongs to the peptidase C19 family.	MPN domain-containing protein.	0.421
F7AAB5_CIOIN	H2Y2N2_CIOIN	ENSCINP00000004230	ENSCINP00000036167	Uncharacterized protein.	MPN domain-containing protein.	0.421
H2XLY1_CIOIN	F6WPB7_CIOIN	ENSCINP00000030663	ENSCINP00000009483	Uncharacterized protein.	BRCC36_C domain-containing protein.	0.999
H2XLY1_CIOIN	H2Y2N2_CIOIN	ENSCINP00000030663	ENSCINP00000036167	Uncharacterized protein.	MPN domain-containing protein.	0.535
H2XLY1_CIOIN	LOC100179683	ENSCINP00000030663	ENSCINP00000030575	Uncharacterized protein.	26S proteasome non-ATPase regulatory subunit 14.	0.750
H2Y2N2_CIOIN	F7A912_CIOIN	ENSCINP00000036167	ENSCINP00000023650	MPN domain-containing protein.	Uncharacterized protein; Belongs to the peptidase C19 family.	0.559
H2Y2N2_CIOIN	F7AA12_CIOIN	ENSCINP00000036167	ENSCINP00000004248	MPN domain-containing protein.	USP domain-containing protein; Belongs to the peptidase C19 family.	0.421
H2Y2N2_CIOIN	F7AAB5_CIOIN	ENSCINP00000036167	ENSCINP00000004230	MPN domain-containing protein.	Uncharacterized protein.	0.421
H2Y2N2_CIOIN	H2XLY1_CIOIN	ENSCINP00000036167	ENSCINP00000030663	MPN domain-containing protein.	Uncharacterized protein.	0.535
H2Y2N2_CIOIN	LOC100187208	ENSCINP00000036167	ENSCINP00000014511	MPN domain-containing protein.	OTU domain-containing protein 5.	0.659
LOC100178793	LOC100187208	ENSCINP00000034086	ENSCINP00000014511	OTU domain-containing protein.	OTU domain-containing protein 5.	0.520
LOC100179683	H2XLY1_CIOIN	ENSCINP00000030575	ENSCINP00000030663	26S proteasome non-ATPase regulatory subunit 14.	Uncharacterized protein.	0.750
LOC100187208	H2Y2N2_CIOIN	ENSCINP00000014511	ENSCINP00000036167	OTU domain-containing protein 5.	MPN domain-containing protein.	0.659
LOC100187208	LOC100178793	ENSCINP00000014511	ENSCINP00000034086	OTU domain-containing protein 5.	OTU domain-containing protein.	0.520