STRINGSTRING
Rev-erb Rev-erb paraxis-like paraxis-like H2XUS5_CIOIN H2XUS5_CIOIN ap4 ap4 e12/e47 e12/e47 F6X8I8_CIOIN F6X8I8_CIOIN snail snail F6R407_CIOIN F6R407_CIOIN Ci-Net Ci-Net LOC100186564 LOC100186564 myc myc
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Rev-erbUncharacterized protein. (597 aa)
paraxis-likeTranscription factor protein. (191 aa)
H2XUS5_CIOINUncharacterized protein. (250 aa)
ap4Transcription factor protein isoform X1. (684 aa)
e12/e47Transcription factor protein. (641 aa)
F6X8I8_CIOINBHLH domain-containing protein. (66 aa)
snailUncharacterized protein. (584 aa)
F6R407_CIOINUncharacterized protein. (1023 aa)
Ci-NetTranscription factor protein. (205 aa)
LOC100186564Protein arginine N-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. (627 aa)
mycTranscription factor protein isoform X1. (681 aa)
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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