30 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2Y1G5_CIOIN	Uncharacterized protein. (820 aa)
	LOC104266887	Ubiquitin-conjugating enzyme E2 D3-like; Belongs to the ubiquitin-conjugating enzyme family. (149 aa)
	LOC100176962	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (154 aa)
	H2XUW4_CIOIN	UBIQUITIN_CONJUGAT_2 domain-containing protein. (158 aa)
	LOC100175224	Ubiquitin-conjugating enzyme E2 A; Belongs to the ubiquitin-conjugating enzyme family. (156 aa)
	H2XP52_CIOIN	UBIQUITIN_CONJUGAT_2 domain-containing protein. (210 aa)
	LOC100175838	E3 ubiquitin-protein ligase rnf146. (193 aa)
	F7A082_CIOIN	HECT domain-containing protein. (407 aa)
	F6PKV2_CIOIN	UBIQUITIN_CONJUGAT_2 domain-containing protein. (144 aa)
	LOC100182334	Ubiquitin-conjugating enzyme E2 G1; Belongs to the ubiquitin-conjugating enzyme family. (167 aa)
	F7AHP3_CIOIN	Uncharacterized protein. (2812 aa)
	LOC100177981	Ubiquitin-conjugating enzyme E2 R2-like; Belongs to the ubiquitin-conjugating enzyme family. (230 aa)
	F6W673_CIOIN	RBR-type E3 ubiquitin transferase. (502 aa)
	F6XVY9_CIOIN	HECT domain-containing protein. (862 aa)
	F6XWG9_CIOIN	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (165 aa)
	LOC100182651	E3 ubiquitin-protein ligase RNF4 isoform X1. (224 aa)
	LOC100185453	Ubiquitin-conjugating enzyme E2 E1; Belongs to the ubiquitin-conjugating enzyme family. (251 aa)
	F6PW28_CIOIN	CULLIN_2 domain-containing protein; Belongs to the cullin family. (778 aa)
	LOC100181970	E3 ubiquitin-protein ligase ZNRF2. (217 aa)
	F6VAW2_CIOIN	Uncharacterized protein. (603 aa)
	LOC100184259	E3 ubiquitin-protein ligase MARCH6. (887 aa)
	LOC100175624	Ubiquitin-conjugating enzyme E2-17 kDa; Belongs to the ubiquitin-conjugating enzyme family. (148 aa)
	LOC100185831	Ubiquitin-conjugating enzyme E2-17 kDa; Belongs to the ubiquitin-conjugating enzyme family. (148 aa)
	LOC100183458	Ubiquitin-conjugating enzyme E2-17 kDa; Belongs to the ubiquitin-conjugating enzyme family. (147 aa)
	F6SQ79_CIOIN	RING-type domain-containing protein. (190 aa)
	F6SQA2_CIOIN	DTC domain-containing protein. (81 aa)
	F6SQE1_CIOIN	Uncharacterized protein. (651 aa)
	F6R472_CIOIN	CULLIN_2 domain-containing protein; Belongs to the cullin family. (707 aa)
	LOC100176571	Uncharacterized protein; Belongs to the ubiquitin-conjugating enzyme family. (198 aa)
	F6RL50_CIOIN	Uncharacterized protein. (303 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6PKV2_CIOIN	F6XWG9_CIOIN	ENSCINP00000018235	ENSCINP00000015354	UBIQUITIN_CONJUGAT_2 domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.614
F6PKV2_CIOIN	H2XP52_CIOIN	ENSCINP00000018235	ENSCINP00000031435	UBIQUITIN_CONJUGAT_2 domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.497
F6PKV2_CIOIN	H2XUW4_CIOIN	ENSCINP00000018235	ENSCINP00000033448	UBIQUITIN_CONJUGAT_2 domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.667
F6PKV2_CIOIN	LOC100175224	ENSCINP00000018235	ENSCINP00000032379	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-conjugating enzyme E2 A; Belongs to the ubiquitin-conjugating enzyme family.	0.590
F6PKV2_CIOIN	LOC100175624	ENSCINP00000018235	ENSCINP00000007971	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-conjugating enzyme E2-17 kDa; Belongs to the ubiquitin-conjugating enzyme family.	0.502
F6PKV2_CIOIN	LOC100176571	ENSCINP00000018235	ENSCINP00000004770	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein; Belongs to the ubiquitin-conjugating enzyme family.	0.681
F6PKV2_CIOIN	LOC100176962	ENSCINP00000018235	ENSCINP00000034116	UBIQUITIN_CONJUGAT_2 domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.709
F6PKV2_CIOIN	LOC100177981	ENSCINP00000018235	ENSCINP00000016841	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-conjugating enzyme E2 R2-like; Belongs to the ubiquitin-conjugating enzyme family.	0.497
F6PKV2_CIOIN	LOC100182334	ENSCINP00000018235	ENSCINP00000017801	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-conjugating enzyme E2 G1; Belongs to the ubiquitin-conjugating enzyme family.	0.561
F6PKV2_CIOIN	LOC100183458	ENSCINP00000018235	ENSCINP00000007951	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-conjugating enzyme E2-17 kDa; Belongs to the ubiquitin-conjugating enzyme family.	0.575
F6PKV2_CIOIN	LOC100184259	ENSCINP00000018235	ENSCINP00000010355	UBIQUITIN_CONJUGAT_2 domain-containing protein.	E3 ubiquitin-protein ligase MARCH6.	0.551
F6PKV2_CIOIN	LOC100185453	ENSCINP00000018235	ENSCINP00000014090	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-conjugating enzyme E2 E1; Belongs to the ubiquitin-conjugating enzyme family.	0.658
F6PKV2_CIOIN	LOC100185831	ENSCINP00000018235	ENSCINP00000007962	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-conjugating enzyme E2-17 kDa; Belongs to the ubiquitin-conjugating enzyme family.	0.575
F6PKV2_CIOIN	LOC104266887	ENSCINP00000018235	ENSCINP00000035486	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-conjugating enzyme E2 D3-like; Belongs to the ubiquitin-conjugating enzyme family.	0.530
F6PW28_CIOIN	F6R472_CIOIN	ENSCINP00000013359	ENSCINP00000006037	CULLIN_2 domain-containing protein; Belongs to the cullin family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.650
F6PW28_CIOIN	H2XP52_CIOIN	ENSCINP00000013359	ENSCINP00000031435	CULLIN_2 domain-containing protein; Belongs to the cullin family.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.729
F6PW28_CIOIN	LOC100175624	ENSCINP00000013359	ENSCINP00000007971	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Ubiquitin-conjugating enzyme E2-17 kDa; Belongs to the ubiquitin-conjugating enzyme family.	0.499
F6PW28_CIOIN	LOC100176962	ENSCINP00000013359	ENSCINP00000034116	CULLIN_2 domain-containing protein; Belongs to the cullin family.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.723
F6PW28_CIOIN	LOC100177981	ENSCINP00000013359	ENSCINP00000016841	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Ubiquitin-conjugating enzyme E2 R2-like; Belongs to the ubiquitin-conjugating enzyme family.	0.729
F6PW28_CIOIN	LOC100182334	ENSCINP00000013359	ENSCINP00000017801	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Ubiquitin-conjugating enzyme E2 G1; Belongs to the ubiquitin-conjugating enzyme family.	0.571