Groups of genes that are frequently observed in each other's genomic neighborhood.
STRING allows inspection of the interaction evidence for any given network. Choose any of the viewers above (disabled if not applicable in your network).
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
Node Content
empty nodes: proteins of unknown 3D structure
filled nodes: a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC100177853
Dickkopf-related protein 3. (394 aa)
F6UMA7_CIOIN
PID domain-containing protein. (458 aa)
F6QX80_CIOIN
DAGKc domain-containing protein. (374 aa)
H2XYN3_CIOIN
DAGKa domain-containing protein. (184 aa)
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719 Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt