STRINGSTRING
tgfbr-ia tgfbr-ia F6UJF1_CIOIN F6UJF1_CIOIN LOC104265927 LOC104265927 F7B9G3_CIOIN F7B9G3_CIOIN bmp5/7-like bmp5/7-like smad4 smad4 nodal nodal F6RS66_CIOIN F6RS66_CIOIN Bmp3 Bmp3 F6UMA7_CIOIN F6UMA7_CIOIN LOC100183284 LOC100183284 Lefty/antivin Lefty/antivin Tgfbeta2 Tgfbeta2 F6R7T5_CIOIN F6R7T5_CIOIN tgfbr-iia tgfbr-iia Tgfbr-iib Tgfbr-iib LOC100186863 LOC100186863 LOC104265605 LOC104265605 LOC100184368 LOC100184368 H2Y213_CIOIN H2Y213_CIOIN H2XQV1_CIOIN H2XQV1_CIOIN Bmp2/4 Bmp2/4 H2XKA7_CIOIN H2XKA7_CIOIN LOC100178899 LOC100178899 Tgfbeta-na1 Tgfbeta-na1 F6RLL0_CIOIN F6RLL0_CIOIN F7A9C9_CIOIN F7A9C9_CIOIN F6XKR6_CIOIN F6XKR6_CIOIN
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
tgfbr-iaReceptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. (423 aa)
F6UJF1_CIOINUDENN FLCN/SMCR8-type domain-containing protein. (561 aa)
LOC104265927Protein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (384 aa)
F7B9G3_CIOINTGF_BETA_2 domain-containing protein. (387 aa)
bmp5/7-likeTransforming growth factor beta superfamily signaling ligand isoform X1. (660 aa)
smad4Mothers against decapentaplegic homolog. (527 aa)
nodalTransforming growth factor beta superfamily signaling ligand isoform X1. (415 aa)
F6RS66_CIOINProtein kinase domain-containing protein; Belongs to the protein kinase superfamily. (462 aa)
Bmp3TGF_BETA_2 domain-containing protein. (669 aa)
F6UMA7_CIOINPID domain-containing protein. (458 aa)
LOC100183284SKIP_SNW domain-containing protein. (534 aa)
Lefty/antivinTGF_BETA_2 domain-containing protein. (385 aa)
Tgfbeta2TGF_BETA_2 domain-containing protein. (435 aa)
F6R7T5_CIOINUncharacterized protein. (1533 aa)
tgfbr-iiaSerine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (622 aa)
Tgfbr-iibReceptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (567 aa)
LOC100186863PDZ domain-containing protein GIPC1. (316 aa)
LOC104265605Uncharacterized protein. (575 aa)
LOC100184368Integrin-linked protein kinase. (447 aa)
H2Y213_CIOINUncharacterized protein. (124 aa)
H2XQV1_CIOINUncharacterized protein. (181 aa)
Bmp2/4TGFb_propeptide domain-containing protein. (376 aa)
H2XKA7_CIOINUncharacterized protein. (142 aa)
LOC100178899Uncharacterized protein. (259 aa)
Tgfbeta-na1TGF_BETA_2 domain-containing protein. (492 aa)
F6RLL0_CIOINUncharacterized protein. (322 aa)
F7A9C9_CIOINUncharacterized protein. (337 aa)
F6XKR6_CIOINUncharacterized protein. (180 aa)
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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