(32 nodes) Synaptic vesicle cycle network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2XQI8_CIOIN	DUF1866 domain-containing protein. (194 aa)
	H2XRZ3_CIOIN	t-SNARE coiled-coil homology domain-containing protein. (76 aa)
	H2XVQ2_CIOIN	Uncharacterized protein. (1694 aa)
	LOC100176356	SNARE-associated protein Snapin-like. (133 aa)
	LOC100182001	Phosphatidylinositol-binding clathrin assembly protein LAP-like. (615 aa)
	LOC100181289	Cyclin-dependent-like kinase 5; Belongs to the protein kinase superfamily. (292 aa)
	F7A8B4_CIOIN	Uncharacterized protein. (495 aa)
	F6T5E3_CIOIN	FSA_C domain-containing protein. (739 aa)
	F6Y321_CIOIN	t-SNARE coiled-coil homology domain-containing protein. (236 aa)
	F6Z2G5_CIOIN	MFS domain-containing protein. (488 aa)
	F7B9A9_CIOIN	Uncharacterized protein. (1197 aa)
	F6SNI9_CIOIN	Uncharacterized protein. (252 aa)
	ci-arfgap-3	Zinc finger protein Ci-ArfGAP-3. (760 aa)
	F6T2N7_CIOIN	Adaptin_N domain-containing protein. (243 aa)
	F6T2R5_CIOIN	AP-3 complex subunit delta; Belongs to the adaptor complexes large subunit family. (914 aa)
	F6VF77_CIOIN	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (870 aa)
	LOC100176945	Protein unc-13 homolog B-like. (1518 aa)
	F6U1C4_CIOIN	Uncharacterized protein. (318 aa)
	F6SDZ0_CIOIN	Uncharacterized protein. (787 aa)
	F7A801_CIOIN	Uncharacterized protein. (389 aa)
	Syt1	Uncharacterized protein. (328 aa)
	syn	Uncharacterized protein. (519 aa)
	vgat	Aa_trans domain-containing protein. (637 aa)
	LOC100181883	AP-3 complex subunit beta; Belongs to the adaptor complexes large subunit family. (1057 aa)
	F6PHJ3_CIOIN	Uncharacterized protein; Belongs to the adaptor complexes medium subunit family. (564 aa)
	vglut	MFS domain-containing protein. (663 aa)
	F6U959_CIOIN	Uncharacterized protein. (948 aa)
	F6WU04_CIOIN	Uncharacterized protein. (223 aa)
	LOC100183862	Uncharacterized protein. (360 aa)
	LOC100187429	Synaptosomal-associated protein; Belongs to the SNAP-25 family. (160 aa)
	H2XLM8_CIOIN	Uncharacterized protein. (290 aa)
	H2XQB4_CIOIN	COesterase domain-containing protein. (733 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6PHJ3_CIOIN	F6U1C4_CIOIN	ENSCINP00000018271	ENSCINP00000001641	Uncharacterized protein; Belongs to the adaptor complexes medium subunit family.	Uncharacterized protein.	0.451
F6PHJ3_CIOIN	H2XQI8_CIOIN	ENSCINP00000018271	ENSCINP00000031922	Uncharacterized protein; Belongs to the adaptor complexes medium subunit family.	DUF1866 domain-containing protein.	0.489
F6PHJ3_CIOIN	H2XVQ2_CIOIN	ENSCINP00000018271	ENSCINP00000033736	Uncharacterized protein; Belongs to the adaptor complexes medium subunit family.	Uncharacterized protein.	0.963
F6PHJ3_CIOIN	LOC100182001	ENSCINP00000018271	ENSCINP00000012392	Uncharacterized protein; Belongs to the adaptor complexes medium subunit family.	Phosphatidylinositol-binding clathrin assembly protein LAP-like.	0.792
F6PHJ3_CIOIN	LOC100183862	ENSCINP00000018271	ENSCINP00000024816	Uncharacterized protein; Belongs to the adaptor complexes medium subunit family.	Uncharacterized protein.	0.692
F6PHJ3_CIOIN	Syt1	ENSCINP00000018271	ENSCINP00000013989	Uncharacterized protein; Belongs to the adaptor complexes medium subunit family.	Uncharacterized protein.	0.907
F6SDZ0_CIOIN	F6U959_CIOIN	ENSCINP00000000757	ENSCINP00000021734	Uncharacterized protein.	Uncharacterized protein.	0.746
F6SDZ0_CIOIN	H2XVQ2_CIOIN	ENSCINP00000000757	ENSCINP00000033736	Uncharacterized protein.	Uncharacterized protein.	0.506
F6SDZ0_CIOIN	LOC100176945	ENSCINP00000000757	ENSCINP00000004445	Uncharacterized protein.	Protein unc-13 homolog B-like.	0.566
F6SDZ0_CIOIN	Syt1	ENSCINP00000000757	ENSCINP00000013989	Uncharacterized protein.	Uncharacterized protein.	0.564
F6SDZ0_CIOIN	ci-arfgap-3	ENSCINP00000000757	ENSCINP00000005788	Uncharacterized protein.	Zinc finger protein Ci-ArfGAP-3.	0.518
F6SDZ0_CIOIN	syn	ENSCINP00000000757	ENSCINP00000016535	Uncharacterized protein.	Uncharacterized protein.	0.562
F6SNI9_CIOIN	F6U959_CIOIN	ENSCINP00000010096	ENSCINP00000021734	Uncharacterized protein.	Uncharacterized protein.	0.466
F6SNI9_CIOIN	F6Y321_CIOIN	ENSCINP00000010096	ENSCINP00000011472	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.900
F6SNI9_CIOIN	H2XRZ3_CIOIN	ENSCINP00000010096	ENSCINP00000032427	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.793
F6SNI9_CIOIN	H2XVQ2_CIOIN	ENSCINP00000010096	ENSCINP00000033736	Uncharacterized protein.	Uncharacterized protein.	0.675
F6SNI9_CIOIN	LOC100176356	ENSCINP00000010096	ENSCINP00000035812	Uncharacterized protein.	SNARE-associated protein Snapin-like.	0.404
F6SNI9_CIOIN	LOC100176945	ENSCINP00000010096	ENSCINP00000004445	Uncharacterized protein.	Protein unc-13 homolog B-like.	0.596
F6SNI9_CIOIN	LOC100187429	ENSCINP00000010096	ENSCINP00000027629	Uncharacterized protein.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.677
F6SNI9_CIOIN	syn	ENSCINP00000010096	ENSCINP00000016535	Uncharacterized protein.	Uncharacterized protein.	0.587