15 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2XR49_CIOIN	Uncharacterized protein. (907 aa)
	ekn1	EKN1 protein. (434 aa)
	H2Y1I4_CIOIN	WD_REPEATS_REGION domain-containing protein. (356 aa)
	LOC100182997	33 kDa inner dynein arm light chain, axonemal. (257 aa)
	LOC100183858	Stress-induced-phosphoprotein 1-like isoform X2. (211 aa)
	F7A606_CIOIN	Uncharacterized protein. (543 aa)
	LOC100177840	MYND-type domain-containing protein. (433 aa)
	Ic1	Uncharacterized protein. (594 aa)
	F6VYZ5_CIOIN	WD_REPEATS_REGION domain-containing protein. (778 aa)
	LOC100180883	Tctex1 domain-containing protein 2-like. (127 aa)
	F6YY79_CIOIN	Uncharacterized protein. (478 aa)
	F6PWA8_CIOIN	Uncharacterized protein. (284 aa)
	LOC100183367	RuvB-like helicase; Belongs to the RuvB family. (456 aa)
	LOC100177411	RuvB-like helicase; Belongs to the RuvB family. (467 aa)
	LOC100186702	Dynein assembly factor 3, axonemal. (460 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6VYZ5_CIOIN	Ic1	ENSCINP00000015129	ENSCINP00000014437	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.544
F6VYZ5_CIOIN	LOC100180883	ENSCINP00000015129	ENSCINP00000016129	WD_REPEATS_REGION domain-containing protein.	Tctex1 domain-containing protein 2-like.	0.461
F6YY79_CIOIN	H2XR49_CIOIN	ENSCINP00000024246	ENSCINP00000032133	Uncharacterized protein.	Uncharacterized protein.	0.537
F6YY79_CIOIN	H2Y1I4_CIOIN	ENSCINP00000024246	ENSCINP00000035768	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.503
F6YY79_CIOIN	Ic1	ENSCINP00000024246	ENSCINP00000014437	Uncharacterized protein.	Uncharacterized protein.	0.539
F6YY79_CIOIN	LOC100177840	ENSCINP00000024246	ENSCINP00000013918	Uncharacterized protein.	MYND-type domain-containing protein.	0.663
F6YY79_CIOIN	LOC100182997	ENSCINP00000024246	ENSCINP00000035805	Uncharacterized protein.	33 kDa inner dynein arm light chain, axonemal.	0.508
F6YY79_CIOIN	LOC100186702	ENSCINP00000024246	ENSCINP00000002747	Uncharacterized protein.	Dynein assembly factor 3, axonemal.	0.537
F6YY79_CIOIN	ekn1	ENSCINP00000024246	ENSCINP00000032421	Uncharacterized protein.	EKN1 protein.	0.516
F7A606_CIOIN	LOC100183367	ENSCINP00000010199	ENSCINP00000009992	Uncharacterized protein.	RuvB-like helicase; Belongs to the RuvB family.	0.475
H2XR49_CIOIN	F6YY79_CIOIN	ENSCINP00000032133	ENSCINP00000024246	Uncharacterized protein.	Uncharacterized protein.	0.537
H2XR49_CIOIN	H2Y1I4_CIOIN	ENSCINP00000032133	ENSCINP00000035768	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.596
H2XR49_CIOIN	Ic1	ENSCINP00000032133	ENSCINP00000014437	Uncharacterized protein.	Uncharacterized protein.	0.526
H2XR49_CIOIN	LOC100177411	ENSCINP00000032133	ENSCINP00000009659	Uncharacterized protein.	RuvB-like helicase; Belongs to the RuvB family.	0.611
H2XR49_CIOIN	LOC100177840	ENSCINP00000032133	ENSCINP00000013918	Uncharacterized protein.	MYND-type domain-containing protein.	0.596
H2XR49_CIOIN	LOC100182997	ENSCINP00000032133	ENSCINP00000035805	Uncharacterized protein.	33 kDa inner dynein arm light chain, axonemal.	0.509
H2XR49_CIOIN	LOC100183367	ENSCINP00000032133	ENSCINP00000009992	Uncharacterized protein.	RuvB-like helicase; Belongs to the RuvB family.	0.547
H2XR49_CIOIN	LOC100186702	ENSCINP00000032133	ENSCINP00000002747	Uncharacterized protein.	Dynein assembly factor 3, axonemal.	0.527
H2Y1I4_CIOIN	F6YY79_CIOIN	ENSCINP00000035768	ENSCINP00000024246	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.503
H2Y1I4_CIOIN	H2XR49_CIOIN	ENSCINP00000035768	ENSCINP00000032133	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.596