(35 nodes) Catalytic activity, acting on a glycoprotein network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F7A8D3_CIOIN	GT23 domain-containing protein; Belongs to the glycosyltransferase 23 family. (365 aa)
	F7BHZ3_CIOIN	Uncharacterized protein. (230 aa)
	F6YZM8_CIOIN	GT23 domain-containing protein; Belongs to the glycosyltransferase 23 family. (168 aa)
	H2XKR8_CIOIN	Uncharacterized protein. (137 aa)
	H2XN21_CIOIN	Uncharacterized protein. (423 aa)
	H2XN34_CIOIN	GT23 domain-containing protein; Belongs to the glycosyltransferase 23 family. (449 aa)
	LOC100187449	Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A isoform X1. (354 aa)
	F7A693_CIOIN	ILEI domain-containing protein. (647 aa)
	F6TSZ2_CIOIN	GT23 domain-containing protein; Belongs to the glycosyltransferase 23 family. (202 aa)
	F6R901_CIOIN	Uncharacterized protein. (835 aa)
	F7B9A3_CIOIN	Uncharacterized protein; Belongs to the glycosyltransferase 23 family. (451 aa)
	F6ZQX2_CIOIN	GT23 domain-containing protein; Belongs to the glycosyltransferase 23 family. (423 aa)
	LOC100184175	GT23 domain-containing protein; Belongs to the glycosyltransferase 23 family. (558 aa)
	LOC100183416	Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A-like. (356 aa)
	F6XM91_CIOIN	Uncharacterized protein; Belongs to the glycosyltransferase 23 family. (220 aa)
	H2XQC4_CIOIN	GT23 domain-containing protein; Belongs to the glycosyltransferase 23 family. (489 aa)
	b3galt6	Hexosyltransferase. (327 aa)
	H2XYH4_CIOIN	Uncharacterized protein; Belongs to the glycosyltransferase 23 family. (405 aa)
	H2XYI9_CIOIN	Uncharacterized protein; Belongs to the glycosyltransferase 23 family. (422 aa)
	F6V597_CIOIN	Uncharacterized protein. (444 aa)
	H2Y0J1_CIOIN	GT23 domain-containing protein; Belongs to the glycosyltransferase 23 family. (573 aa)
	fut8	Alpha-(1,6)-fucosyltransferase; Catalyzes the addition of fucose in alpha 1-6 linkage to the first GlcNAc residue, next to the peptide chains in N-glycans. Belongs to the glycosyltransferase 23 family. (560 aa)
	F6TM93_CIOIN	Uncharacterized protein. (216 aa)
	F6XKF3_CIOIN	Uncharacterized protein. (146 aa)
	F7AWP7_CIOIN	GT23 domain-containing protein; Belongs to the glycosyltransferase 23 family. (564 aa)
	F6TBU9_CIOIN	GT23 domain-containing protein; Belongs to the glycosyltransferase 23 family. (375 aa)
	LOC100181865	Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A-like. (504 aa)
	F6TU56_CIOIN	Uncharacterized protein. (259 aa)
	F7AVD2_CIOIN	Glyco_transf_7C domain-containing protein. (136 aa)
	Fut8	Alpha-(1,6)-fucosyltransferase; Catalyzes the addition of fucose in alpha 1-6 linkage to the first GlcNAc residue, next to the peptide chains in N-glycans. Belongs to the glycosyltransferase 23 family. (524 aa)
	H2XPR6_CIOIN	Uncharacterized protein; Belongs to the glycosyltransferase 23 family. (409 aa)
	LOC104265699	GT23 domain-containing protein; Belongs to the glycosyltransferase 23 family. (504 aa)
	F6XZ31_CIOIN	Uncharacterized protein. (347 aa)
	F6SSQ7_CIOIN	Uncharacterized protein. (660 aa)
	F6XS35_CIOIN	GT23 domain-containing protein; Belongs to the glycosyltransferase 23 family. (420 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6SSQ7_CIOIN	F6TM93_CIOIN	ENSCINP00000004438	ENSCINP00000021076	Uncharacterized protein.	Uncharacterized protein.	0.908
F6SSQ7_CIOIN	F6XKF3_CIOIN	ENSCINP00000004438	ENSCINP00000021665	Uncharacterized protein.	Uncharacterized protein.	0.908
F6SSQ7_CIOIN	F6XZ31_CIOIN	ENSCINP00000004438	ENSCINP00000003098	Uncharacterized protein.	Uncharacterized protein.	0.436
F6SSQ7_CIOIN	LOC100181865	ENSCINP00000004438	ENSCINP00000022844	Uncharacterized protein.	Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A-like.	0.927
F6SSQ7_CIOIN	LOC100183416	ENSCINP00000004438	ENSCINP00000017580	Uncharacterized protein.	Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A-like.	0.908
F6SSQ7_CIOIN	LOC100187449	ENSCINP00000004438	ENSCINP00000005475	Uncharacterized protein.	Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A isoform X1.	0.925
F6TBU9_CIOIN	F6TM93_CIOIN	ENSCINP00000022020	ENSCINP00000021076	GT23 domain-containing protein; Belongs to the glycosyltransferase 23 family.	Uncharacterized protein.	0.652
F6TBU9_CIOIN	H2XN21_CIOIN	ENSCINP00000022020	ENSCINP00000031054	GT23 domain-containing protein; Belongs to the glycosyltransferase 23 family.	Uncharacterized protein.	0.908
F6TBU9_CIOIN	LOC100181865	ENSCINP00000022020	ENSCINP00000022844	GT23 domain-containing protein; Belongs to the glycosyltransferase 23 family.	Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A-like.	0.659
F6TBU9_CIOIN	LOC100183416	ENSCINP00000022020	ENSCINP00000017580	GT23 domain-containing protein; Belongs to the glycosyltransferase 23 family.	Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A-like.	0.653
F6TBU9_CIOIN	LOC100187449	ENSCINP00000022020	ENSCINP00000005475	GT23 domain-containing protein; Belongs to the glycosyltransferase 23 family.	Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A isoform X1.	0.659
F6TM93_CIOIN	F6SSQ7_CIOIN	ENSCINP00000021076	ENSCINP00000004438	Uncharacterized protein.	Uncharacterized protein.	0.908
F6TM93_CIOIN	F6TBU9_CIOIN	ENSCINP00000021076	ENSCINP00000022020	Uncharacterized protein.	GT23 domain-containing protein; Belongs to the glycosyltransferase 23 family.	0.652
F6TM93_CIOIN	F6TSZ2_CIOIN	ENSCINP00000021076	ENSCINP00000008864	Uncharacterized protein.	GT23 domain-containing protein; Belongs to the glycosyltransferase 23 family.	0.652
F6TM93_CIOIN	F6XKF3_CIOIN	ENSCINP00000021076	ENSCINP00000021665	Uncharacterized protein.	Uncharacterized protein.	0.908
F6TM93_CIOIN	F6XM91_CIOIN	ENSCINP00000021076	ENSCINP00000017718	Uncharacterized protein.	Uncharacterized protein; Belongs to the glycosyltransferase 23 family.	0.652
F6TM93_CIOIN	F6ZQX2_CIOIN	ENSCINP00000021076	ENSCINP00000011696	Uncharacterized protein.	GT23 domain-containing protein; Belongs to the glycosyltransferase 23 family.	0.652
F6TM93_CIOIN	F7A8D3_CIOIN	ENSCINP00000021076	ENSCINP00000025738	Uncharacterized protein.	GT23 domain-containing protein; Belongs to the glycosyltransferase 23 family.	0.652
F6TM93_CIOIN	F7AWP7_CIOIN	ENSCINP00000021076	ENSCINP00000021831	Uncharacterized protein.	GT23 domain-containing protein; Belongs to the glycosyltransferase 23 family.	0.652
F6TM93_CIOIN	F7B9A3_CIOIN	ENSCINP00000021076	ENSCINP00000010121	Uncharacterized protein.	Uncharacterized protein; Belongs to the glycosyltransferase 23 family.	0.652