(27 nodes) Regulation of cilium assembly network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2Y204_CIOIN	Uncharacterized protein. (246 aa)
	F6TI28_CIOIN	Mitogen-activated protein kinase. (364 aa)
	LOC100181294	Uncharacterized protein. (830 aa)
	F6PHM0_CIOIN	Uncharacterized protein. (498 aa)
	LOC100185558	Dentin sialophosphoprotein-like isoform X1. (843 aa)
	LOC100177840	MYND-type domain-containing protein. (433 aa)
	LOC100186388	WD repeat-containing protein WRAP73. (449 aa)
	F6WBK6_CIOIN	TPR_REGION domain-containing protein. (446 aa)
	F6U8H5_CIOIN	Uncharacterized protein. (1490 aa)
	F6UAC6_CIOIN	Calponin-homology (CH) domain-containing protein. (217 aa)
	F6S0E6_CIOIN	Uncharacterized protein. (1113 aa)
	LOC100187521	Uncharacterized protein. (348 aa)
	Ic4	Uncharacterized protein. (550 aa)
	F6V476_CIOIN	Uncharacterized protein. (282 aa)
	F6ZBN8_CIOIN	CAP-Gly domain-containing protein. (292 aa)
	F6VMB8_CIOIN	Uncharacterized protein. (259 aa)
	Htt	Uncharacterized protein. (639 aa)
	LOC778836	Homeobox domain-containing protein. (146 aa)
	H2XK78_CIOIN	Uncharacterized protein. (147 aa)
	H2XQ82_CIOIN	Uncharacterized protein. (217 aa)
	H2XQW5_CIOIN	Uncharacterized protein. (186 aa)
	H2XTB6_CIOIN	Uncharacterized protein. (412 aa)
	LOC100179293	PPP1R35_C domain-containing protein. (256 aa)
	H2XTN1_CIOIN	Uncharacterized protein. (141 aa)
	atg5	Autophagy protein 5; Involved in autophagic vesicle formation. (268 aa)
	H2XY78_CIOIN	Uncharacterized protein. (207 aa)
	H2Y074_CIOIN	Uncharacterized protein. (275 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6S0E6_CIOIN	F6UAC6_CIOIN	ENSCINP00000022381	ENSCINP00000021422	Uncharacterized protein.	Calponin-homology (CH) domain-containing protein.	0.900
F6U8H5_CIOIN	F6WBK6_CIOIN	ENSCINP00000019435	ENSCINP00000019082	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.534
F6U8H5_CIOIN	LOC100177840	ENSCINP00000019435	ENSCINP00000013918	Uncharacterized protein.	MYND-type domain-containing protein.	0.567
F6U8H5_CIOIN	LOC100181294	ENSCINP00000019435	ENSCINP00000005526	Uncharacterized protein.	Uncharacterized protein.	0.785
F6U8H5_CIOIN	LOC100187521	ENSCINP00000019435	ENSCINP00000022791	Uncharacterized protein.	Uncharacterized protein.	0.723
F6UAC6_CIOIN	F6S0E6_CIOIN	ENSCINP00000021422	ENSCINP00000022381	Calponin-homology (CH) domain-containing protein.	Uncharacterized protein.	0.900
F6VMB8_CIOIN	LOC100185558	ENSCINP00000026555	ENSCINP00000011624	Uncharacterized protein.	Dentin sialophosphoprotein-like isoform X1.	0.749
F6WBK6_CIOIN	F6U8H5_CIOIN	ENSCINP00000019082	ENSCINP00000019435	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.534
F6WBK6_CIOIN	LOC100181294	ENSCINP00000019082	ENSCINP00000005526	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.463
H2XQ82_CIOIN	H2XQW5_CIOIN	ENSCINP00000031816	ENSCINP00000032049	Uncharacterized protein.	Uncharacterized protein.	0.936
H2XQ82_CIOIN	H2XTN1_CIOIN	ENSCINP00000031816	ENSCINP00000033015	Uncharacterized protein.	Uncharacterized protein.	0.945
H2XQ82_CIOIN	H2Y074_CIOIN	ENSCINP00000031816	ENSCINP00000035308	Uncharacterized protein.	Uncharacterized protein.	0.942
H2XQW5_CIOIN	H2XQ82_CIOIN	ENSCINP00000032049	ENSCINP00000031816	Uncharacterized protein.	Uncharacterized protein.	0.936
H2XQW5_CIOIN	H2XTN1_CIOIN	ENSCINP00000032049	ENSCINP00000033015	Uncharacterized protein.	Uncharacterized protein.	0.916
H2XQW5_CIOIN	H2Y074_CIOIN	ENSCINP00000032049	ENSCINP00000035308	Uncharacterized protein.	Uncharacterized protein.	0.947
H2XTN1_CIOIN	H2XQ82_CIOIN	ENSCINP00000033015	ENSCINP00000031816	Uncharacterized protein.	Uncharacterized protein.	0.945
H2XTN1_CIOIN	H2XQW5_CIOIN	ENSCINP00000033015	ENSCINP00000032049	Uncharacterized protein.	Uncharacterized protein.	0.916
H2XTN1_CIOIN	H2Y074_CIOIN	ENSCINP00000033015	ENSCINP00000035308	Uncharacterized protein.	Uncharacterized protein.	0.925
H2XY78_CIOIN	H2Y204_CIOIN	ENSCINP00000034612	ENSCINP00000035939	Uncharacterized protein.	Uncharacterized protein.	0.529
H2XY78_CIOIN	Htt	ENSCINP00000034612	ENSCINP00000027572	Uncharacterized protein.	Uncharacterized protein.	0.657