13 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2XRL5_CIOIN	zf-DNA_Pol domain-containing protein. (143 aa)
	LOC100182896	DNA replication complex GINS protein PSF1. (195 aa)
	H2Y306_CIOIN	Sld5 domain-containing protein. (206 aa)
	LOC108950147	DNA helicase; Belongs to the MCM family. (798 aa)
	LOC100176589	DNA helicase; Belongs to the MCM family. (785 aa)
	F6RKM9_CIOIN	DNA helicase; Belongs to the MCM family. (820 aa)
	F6Y1Y0_CIOIN	Uncharacterized protein. (217 aa)
	F6UIT3_CIOIN	Uncharacterized protein. (162 aa)
	F6RZM2_CIOIN	DNA polymerase. (382 aa)
	F6W6L5_CIOIN	MCM domain-containing protein; Belongs to the MCM family. (422 aa)
	F6W685_CIOIN	Uncharacterized protein. (428 aa)
	F6T368_CIOIN	DNA_pol_B_exo1 domain-containing protein. (276 aa)
	cdc45	Uncharacterized protein. (249 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6RKM9_CIOIN	F6RZM2_CIOIN	ENSCINP00000013159	ENSCINP00000003220	DNA helicase; Belongs to the MCM family.	DNA polymerase.	0.825
F6RKM9_CIOIN	F6T368_CIOIN	ENSCINP00000013159	ENSCINP00000029299	DNA helicase; Belongs to the MCM family.	DNA_pol_B_exo1 domain-containing protein.	0.825
F6RKM9_CIOIN	F6UIT3_CIOIN	ENSCINP00000013159	ENSCINP00000010855	DNA helicase; Belongs to the MCM family.	Uncharacterized protein.	0.975
F6RKM9_CIOIN	F6W685_CIOIN	ENSCINP00000013159	ENSCINP00000016062	DNA helicase; Belongs to the MCM family.	Uncharacterized protein.	0.994
F6RKM9_CIOIN	F6W6L5_CIOIN	ENSCINP00000013159	ENSCINP00000016059	DNA helicase; Belongs to the MCM family.	MCM domain-containing protein; Belongs to the MCM family.	0.992
F6RKM9_CIOIN	F6Y1Y0_CIOIN	ENSCINP00000013159	ENSCINP00000011712	DNA helicase; Belongs to the MCM family.	Uncharacterized protein.	0.845
F6RKM9_CIOIN	H2XRL5_CIOIN	ENSCINP00000013159	ENSCINP00000032299	DNA helicase; Belongs to the MCM family.	zf-DNA_Pol domain-containing protein.	0.825
F6RKM9_CIOIN	H2Y306_CIOIN	ENSCINP00000013159	ENSCINP00000036291	DNA helicase; Belongs to the MCM family.	Sld5 domain-containing protein.	0.982
F6RKM9_CIOIN	LOC100176589	ENSCINP00000013159	ENSCINP00000014916	DNA helicase; Belongs to the MCM family.	DNA helicase; Belongs to the MCM family.	0.999
F6RKM9_CIOIN	LOC100182896	ENSCINP00000013159	ENSCINP00000034960	DNA helicase; Belongs to the MCM family.	DNA replication complex GINS protein PSF1.	0.981
F6RKM9_CIOIN	LOC108950147	ENSCINP00000013159	ENSCINP00000003001	DNA helicase; Belongs to the MCM family.	DNA helicase; Belongs to the MCM family.	0.999
F6RKM9_CIOIN	cdc45	ENSCINP00000013159	ENSCINP00000032459	DNA helicase; Belongs to the MCM family.	Uncharacterized protein.	0.975
F6RZM2_CIOIN	F6RKM9_CIOIN	ENSCINP00000003220	ENSCINP00000013159	DNA polymerase.	DNA helicase; Belongs to the MCM family.	0.825
F6RZM2_CIOIN	F6T368_CIOIN	ENSCINP00000003220	ENSCINP00000029299	DNA polymerase.	DNA_pol_B_exo1 domain-containing protein.	0.962
F6RZM2_CIOIN	F6UIT3_CIOIN	ENSCINP00000003220	ENSCINP00000010855	DNA polymerase.	Uncharacterized protein.	0.736
F6RZM2_CIOIN	F6W685_CIOIN	ENSCINP00000003220	ENSCINP00000016062	DNA polymerase.	Uncharacterized protein.	0.809
F6RZM2_CIOIN	F6W6L5_CIOIN	ENSCINP00000003220	ENSCINP00000016059	DNA polymerase.	MCM domain-containing protein; Belongs to the MCM family.	0.809
F6RZM2_CIOIN	F6Y1Y0_CIOIN	ENSCINP00000003220	ENSCINP00000011712	DNA polymerase.	Uncharacterized protein.	0.678
F6RZM2_CIOIN	H2XRL5_CIOIN	ENSCINP00000003220	ENSCINP00000032299	DNA polymerase.	zf-DNA_Pol domain-containing protein.	0.730
F6RZM2_CIOIN	H2Y306_CIOIN	ENSCINP00000003220	ENSCINP00000036291	DNA polymerase.	Sld5 domain-containing protein.	0.577