STRINGSTRING
LOC100185398 LOC100185398 H2Y0B1_CIOIN H2Y0B1_CIOIN LOC100182896 LOC100182896 LOC100177065 LOC100177065 H2XYN9_CIOIN H2XYN9_CIOIN H2XXZ3_CIOIN H2XXZ3_CIOIN LOC100182514 LOC100182514 H2XWN4_CIOIN H2XWN4_CIOIN H2XW41_CIOIN H2XW41_CIOIN zf(c2h2)-17 zf(c2h2)-17 H2XVM9_CIOIN H2XVM9_CIOIN H2XV86_CIOIN H2XV86_CIOIN LOC100182647 LOC100182647 H2XT98_CIOIN H2XT98_CIOIN cbf-2 cbf-2 LOC100184077 LOC100184077 H2XRS6_CIOIN H2XRS6_CIOIN H2XRL5_CIOIN H2XRL5_CIOIN LOC100176706 LOC100176706 H2XPE3_CIOIN H2XPE3_CIOIN H2XP71_CIOIN H2XP71_CIOIN H2XNL8_CIOIN H2XNL8_CIOIN LOC100180075 LOC100180075 LOC100175162 LOC100175162 H2XLN9_CIOIN H2XLN9_CIOIN H2XLM7_CIOIN H2XLM7_CIOIN H2XLD1_CIOIN H2XLD1_CIOIN ci-zf(phd)-21 ci-zf(phd)-21 H2XJP4_CIOIN H2XJP4_CIOIN LOC100184063 LOC100184063 LOC113474468 LOC113474468 F6VQG0_CIOIN F6VQG0_CIOIN F6T368_CIOIN F6T368_CIOIN F6TRT4_CIOIN F6TRT4_CIOIN Zf(phd)-26 Zf(phd)-26 nfrkb nfrkb F6W3X7_CIOIN F6W3X7_CIOIN F6W461_CIOIN F6W461_CIOIN LOC100180537 LOC100180537 F6ZJH0_CIOIN F6ZJH0_CIOIN Zf(c2h2)-80 Zf(c2h2)-80 LOC100183690 LOC100183690 LOC100177517 LOC100177517 Zf(c2h2)-101 Zf(c2h2)-101 LOC100184820 LOC100184820 F7B162_CIOIN F7B162_CIOIN LOC100179826 LOC100179826 F6VU73_CIOIN F6VU73_CIOIN F6YYK3_CIOIN F6YYK3_CIOIN Rbp1-like Rbp1-like LOC100185848 LOC100185848 F7BEK1_CIOIN F7BEK1_CIOIN LOC100183401 LOC100183401 F7BPT5_CIOIN F7BPT5_CIOIN F7AQL6_CIOIN F7AQL6_CIOIN F6UXY9_CIOIN F6UXY9_CIOIN F6ZDZ6_CIOIN F6ZDZ6_CIOIN LOC100182488 LOC100182488 LOC778828 LOC778828 F6WUQ7_CIOIN F6WUQ7_CIOIN LOC100187231 LOC100187231 F6W213_CIOIN F6W213_CIOIN F6WMT5_CIOIN F6WMT5_CIOIN F6SPZ6_CIOIN F6SPZ6_CIOIN F6PHE6_CIOIN F6PHE6_CIOIN F6PLC9_CIOIN F6PLC9_CIOIN LOC100186474 LOC100186474 F6R407_CIOIN F6R407_CIOIN LOC100180348 LOC100180348 F6WBW9_CIOIN F6WBW9_CIOIN LOC100182716 LOC100182716 F6Z8G0_CIOIN F6Z8G0_CIOIN LOC104265886 LOC104265886 F6XT34_CIOIN F6XT34_CIOIN F7B7U2_CIOIN F7B7U2_CIOIN LOC100176054 LOC100176054 F6YUQ8_CIOIN F6YUQ8_CIOIN F6VEQ7_CIOIN F6VEQ7_CIOIN mta mta LOC100176076 LOC100176076 F7BF26_CIOIN F7BF26_CIOIN LOC100179869 LOC100179869 H2Y0G6_CIOIN H2Y0G6_CIOIN LOC100175682 LOC100175682 H2Y306_CIOIN H2Y306_CIOIN H2Y379_CIOIN H2Y379_CIOIN F6YH10_CIOIN F6YH10_CIOIN F6SK60_CIOIN F6SK60_CIOIN F6VYS8_CIOIN F6VYS8_CIOIN F6WJV4_CIOIN F6WJV4_CIOIN LOC100175771 LOC100175771 LOC100183367 LOC100183367 F6PM34_CIOIN F6PM34_CIOIN F6QNB6_CIOIN F6QNB6_CIOIN F6QND3_CIOIN F6QND3_CIOIN F6QNL7_CIOIN F6QNL7_CIOIN LOC100177411 LOC100177411 F6U2A4_CIOIN F6U2A4_CIOIN F7ATF3_CIOIN F7ATF3_CIOIN LOC100180409 LOC100180409 swi/snf swi/snf F6YH93_CIOIN F6YH93_CIOIN F6WUJ1_CIOIN F6WUJ1_CIOIN F6ZUL9_CIOIN F6ZUL9_CIOIN F6U886_CIOIN F6U886_CIOIN F6Y9A9_CIOIN F6Y9A9_CIOIN F6YSI2_CIOIN F6YSI2_CIOIN F6YT81_CIOIN F6YT81_CIOIN LOC100183795 LOC100183795 F6Z4B6_CIOIN F6Z4B6_CIOIN LOC100182936 LOC100182936 F6TBB0_CIOIN F6TBB0_CIOIN F6QIV0_CIOIN F6QIV0_CIOIN LOC100183139 LOC100183139 F6RD19_CIOIN F6RD19_CIOIN rcc1 rcc1 LOC100178968 LOC100178968 F6XMX2_CIOIN F6XMX2_CIOIN LOC100182917 LOC100182917 F6R4H7_CIOIN F6R4H7_CIOIN Hmg2-like Hmg2-like LOC100179977 LOC100179977 F6T6Y7_CIOIN F6T6Y7_CIOIN F6UK15_CIOIN F6UK15_CIOIN F6RZM2_CIOIN F6RZM2_CIOIN F6W7J0_CIOIN F6W7J0_CIOIN LOC100182325 LOC100182325 zf(phd)-1 zf(phd)-1 LOC100175935 LOC100175935 F6UPL4_CIOIN F6UPL4_CIOIN SSRP1 SSRP1 F6ZGA4_CIOIN F6ZGA4_CIOIN F6WGY1_CIOIN F6WGY1_CIOIN
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC100185398Actin-like protein 6B; Belongs to the actin family. (423 aa)
H2Y0B1_CIOINHIT-type domain-containing protein. (167 aa)
LOC100182896DNA replication complex GINS protein PSF1. (195 aa)
LOC100177065Uncharacterized protein LOC100177065. (130 aa)
H2XYN9_CIOINUncharacterized protein. (255 aa)
H2XXZ3_CIOINUncharacterized protein. (870 aa)
LOC100182514Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (607 aa)
H2XWN4_CIOINUncharacterized protein. (1068 aa)
H2XW41_CIOINUncharacterized protein. (649 aa)
zf(c2h2)-17Zinc finger protein isoform X1. (399 aa)
H2XVM9_CIOINUncharacterized protein. (639 aa)
H2XV86_CIOINDNA_MISMATCH_REPAIR_2 domain-containing protein. (290 aa)
LOC100182647Barrier-to-autointegration factor. (90 aa)
H2XT98_CIOINRECA_2 domain-containing protein. (265 aa)
cbf-2Transcription factor CBF/NF-Y/archaeal histone -2. (156 aa)
LOC100184077Transcriptional repressor p66-beta isoform X1. (683 aa)
H2XRS6_CIOINUncharacterized protein. (252 aa)
H2XRL5_CIOINzf-DNA_Pol domain-containing protein. (143 aa)
LOC100176706Uncharacterized protein. (224 aa)
H2XPE3_CIOINDNA replication complex GINS protein PSF2; Belongs to the GINS2/PSF2 family. (185 aa)
H2XP71_CIOINBromo domain-containing protein. (495 aa)
H2XNL8_CIOINOrigin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. (419 aa)
LOC100180075DNA polymerase delta subunit 4-like isoform X1. (107 aa)
LOC100175162Polyamine-modulated factor 1-like. (196 aa)
H2XLN9_CIOINUncharacterized protein. (344 aa)
H2XLM7_CIOINUncharacterized protein. (167 aa)
H2XLD1_CIOINTelomere_reg-2 domain-containing protein. (689 aa)
ci-zf(phd)-21Uncharacterized protein. (1298 aa)
H2XJP4_CIOINUncharacterized protein. (368 aa)
LOC100184063Chromatin complexes subunit BAP18 isoform X4. (211 aa)
LOC113474468Replication protein A 14 kDa subunit-like. (118 aa)
F6VQG0_CIOINUncharacterized protein. (160 aa)
F6T368_CIOINDNA_pol_B_exo1 domain-containing protein. (276 aa)
F6TRT4_CIOINSYCP2_ARLD domain-containing protein. (384 aa)
Zf(phd)-26PHD-type domain-containing protein. (257 aa)
nfrkbUncharacterized protein. (310 aa)
F6W3X7_CIOINANK_REP_REGION domain-containing protein. (509 aa)
F6W461_CIOINUncharacterized protein. (211 aa)
LOC100180537Hist_deacetyl domain-containing protein. (292 aa)
F6ZJH0_CIOINUncharacterized protein. (472 aa)
Zf(c2h2)-80Uncharacterized protein. (698 aa)
LOC100183690Uncharacterized protein. (363 aa)
LOC100177517Craniofacial development protein 1; May play a role during embryogenesis. (241 aa)
Zf(c2h2)-101C2H2-type domain-containing protein. (212 aa)
LOC100184820Uncharacterized protein LOC100184820. (227 aa)
F7B162_CIOINUncharacterized protein. (208 aa)
LOC100179826Swi5-dependent recombination DNA repair protein 1 homolog. (171 aa)
F6VU73_CIOINSET domain-containing protein. (453 aa)
F6YYK3_CIOINUncharacterized protein. (583 aa)
Rbp1-likeARID domain-containing protein. (1195 aa)
LOC100185848Deacetylase sirtuin-type domain-containing protein. (357 aa)
F7BEK1_CIOINDNA replication complex GINS protein SLD5; The GINS complex plays an essential role in the initiation of DNA replication; Belongs to the GINS4/SLD5 family. (219 aa)
LOC100183401Origin recognition complex subunit 4; Component of the origin recognition complex (ORC) that binds origins of replication; Belongs to the ORC4 family. (426 aa)
F7BPT5_CIOINCBFD_NFYB_HMF domain-containing protein. (75 aa)
F7AQL6_CIOINTPR_REGION domain-containing protein. (100 aa)
F6UXY9_CIOINARID domain-containing protein. (428 aa)
F6ZDZ6_CIOINUncharacterized protein. (462 aa)
LOC100182488E3 ubiquitin-protein ligase CCNB1IP1-like isoform X1. (285 aa)
LOC778828Uncharacterized protein. (818 aa)
F6WUQ7_CIOINDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2157 aa)
LOC100187231Synaptonemal complex protein 3-like. (230 aa)
F6W213_CIOINUncharacterized protein. (572 aa)
F6WMT5_CIOINHSA domain-containing protein. (374 aa)
F6SPZ6_CIOINHDAC_interact domain-containing protein. (1237 aa)
F6PHE6_CIOINUncharacterized protein. (387 aa)
F6PLC9_CIOINTIMELESS-interacting protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family. (128 aa)
LOC100186474Uncharacterized protein LOC100186474 isoform X1. (164 aa)
F6R407_CIOINUncharacterized protein. (1023 aa)
LOC100180348B-cell CLL/lymphoma 7 protein family member B-like. (167 aa)
F6WBW9_CIOINDNA_pol_E_B domain-containing protein. (165 aa)
LOC100182716Flap endonuclease GEN homolog 1. (709 aa)
F6Z8G0_CIOINProtein kinase domain-containing protein; Belongs to the protein kinase superfamily. (454 aa)
LOC104265886Histone-binding protein RBBP4. (431 aa)
F6XT34_CIOINHMG box domain-containing protein. (405 aa)
F7B7U2_CIOINBromo domain-containing protein. (440 aa)
LOC100176054DNA primase; Belongs to the eukaryotic-type primase small subunit family. (436 aa)
F6YUQ8_CIOINMPN domain-containing protein. (457 aa)
F6VEQ7_CIOINRFX-type winged-helix domain-containing protein. (624 aa)
mtaCi-MTA protein. (661 aa)
LOC100176076Uncharacterized protein LOC100176076. (657 aa)
F7BF26_CIOINUncharacterized protein. (449 aa)
LOC100179869Checkpoint protein; Belongs to the HUS1 family. (286 aa)
H2Y0G6_CIOINUncharacterized protein. (532 aa)
LOC100175682DNA polymerase delta subunit 3. (469 aa)
H2Y306_CIOINSld5 domain-containing protein. (206 aa)
H2Y379_CIOINRPA_C domain-containing protein. (133 aa)
F6YH10_CIOINDNA primase large subunit; DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication; Belongs to the eukaryotic-type primase large subunit family. (466 aa)
F6SK60_CIOINUncharacterized protein. (372 aa)
F6VYS8_CIOINUncharacterized protein. (445 aa)
F6WJV4_CIOINUncharacterized protein. (879 aa)
LOC100175771Cell cycle checkpoint control protein; Belongs to the rad9 family. (424 aa)
LOC100183367RuvB-like helicase; Belongs to the RuvB family. (456 aa)
F6PM34_CIOINBromo domain-containing protein. (594 aa)
F6QNB6_CIOINUncharacterized protein. (157 aa)
F6QND3_CIOINMcm10 domain-containing protein. (755 aa)
F6QNL7_CIOINUncharacterized protein. (1214 aa)
LOC100177411RuvB-like helicase; Belongs to the RuvB family. (467 aa)
F6U2A4_CIOINBAF250_C domain-containing protein. (629 aa)
F7ATF3_CIOINzf-4CXXC_R1 domain-containing protein. (286 aa)
LOC100180409Meiotic recombination protein SPO11. (385 aa)
swi/snfCi-SWI/SNF protein. (1003 aa)
F6YH93_CIOINUncharacterized protein. (1111 aa)
F6WUJ1_CIOINStructural maintenance of chromosomes protein. (1175 aa)
F6ZUL9_CIOINUncharacterized protein. (572 aa)
F6U886_CIOINGLTSCR1 domain-containing protein. (211 aa)
F6Y9A9_CIOINUncharacterized protein. (636 aa)
F6YSI2_CIOINUncharacterized protein. (250 aa)
F6YT81_CIOINUncharacterized protein. (157 aa)
LOC100183795Inhibitor of growth protein. (401 aa)
F6Z4B6_CIOINUncharacterized protein. (758 aa)
LOC100182936RING finger protein 212B-like isoform X1. (310 aa)
F6TBB0_CIOINAAA_16 domain-containing protein. (432 aa)
F6QIV0_CIOINDNA_pol_E_B domain-containing protein. (328 aa)
LOC100183139Uncharacterized protein. (1035 aa)
F6RD19_CIOINUncharacterized protein; Belongs to the actin family. (404 aa)
rcc1Regulator of chromosome condensation. (477 aa)
LOC100178968DNA polymerase. (1064 aa)
F6XMX2_CIOINUncharacterized protein. (279 aa)
LOC100182917Uncharacterized protein. (127 aa)
F6R4H7_CIOINUncharacterized protein. (315 aa)
Hmg2-likeHMG box domain-containing protein. (510 aa)
LOC100179977Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (324 aa)
F6T6Y7_CIOINRRM domain-containing protein. (225 aa)
F6UK15_CIOINSWIB domain-containing protein. (435 aa)
F6RZM2_CIOINDNA polymerase. (382 aa)
F6W7J0_CIOINUncharacterized protein. (224 aa)
LOC100182325Inhibitor of growth protein. (344 aa)
zf(phd)-1Uncharacterized protein. (667 aa)
LOC100175935Ubiquitin carboxyl-terminal hydrolase. (328 aa)
F6UPL4_CIOINPeptidylprolyl isomerase. (227 aa)
SSRP1FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (603 aa)
F6ZGA4_CIOINUncharacterized protein. (135 aa)
F6WGY1_CIOINStructure-specific endonuclease subunit SLX1 homolog; Catalytic subunit of a heterodimeric structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA; Belongs to the SLX1 family. (246 aa)
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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