14 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F7BMT8_CIOIN	Uncharacterized protein. (188 aa)
	LOC100182449	Methylthioribose-1-phosphate isomerase-like; Belongs to the eIF-2B alpha/beta/delta subunits family. (196 aa)
	LOC100185508	WD repeat-containing protein 43. (630 aa)
	Zf(c2h2)-69	Uncharacterized protein. (940 aa)
	F6X153_CIOIN	Uncharacterized protein. (1241 aa)
	F6RCY1_CIOIN	DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...] (504 aa)
	LOC100177120	Methanethiol oxidase. (486 aa)
	F7BQ53_CIOIN	WD_REPEATS_REGION domain-containing protein. (501 aa)
	LOC100181970	E3 ubiquitin-protein ligase ZNRF2. (217 aa)
	F6SQ32_CIOIN	ANK_REP_REGION domain-containing protein. (157 aa)
	LOC100175152	Bis(5'-adenosyl)-triphosphatase. (154 aa)
	F6ZWQ3_CIOIN	Uncharacterized protein. (215 aa)
	H2XRK5_CIOIN	Uncharacterized protein. (195 aa)
	H2XRY8_CIOIN	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (404 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F7BQ53_CIOIN	H2XRY8_CIOIN	ENSCINP00000010927	ENSCINP00000032422	WD_REPEATS_REGION domain-containing protein.	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family.	0.454
F7BQ53_CIOIN	LOC100185508	ENSCINP00000010927	ENSCINP00000000608	WD_REPEATS_REGION domain-containing protein.	WD repeat-containing protein 43.	0.999
H2XRY8_CIOIN	F7BQ53_CIOIN	ENSCINP00000032422	ENSCINP00000010927	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family.	WD_REPEATS_REGION domain-containing protein.	0.454
H2XRY8_CIOIN	LOC100185508	ENSCINP00000032422	ENSCINP00000000608	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family.	WD repeat-containing protein 43.	0.613
LOC100185508	F7BQ53_CIOIN	ENSCINP00000000608	ENSCINP00000010927	WD repeat-containing protein 43.	WD_REPEATS_REGION domain-containing protein.	0.999
LOC100185508	H2XRY8_CIOIN	ENSCINP00000000608	ENSCINP00000032422	WD repeat-containing protein 43.	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family.	0.613