11 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:
	LOC100186181	rRNA 2'-O-methyltransferase fibrillarin. (308 aa)
	LOC100182620	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
	LOC100181225	U6 snRNA-associated Sm-like protein LSm6. (82 aa)
	LOC100178209	Nop domain-containing protein. (561 aa)
	LOC100180728	WD_REPEATS_REGION domain-containing protein. (453 aa)
	H2XP61_CIOIN	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (236 aa)
	LOC100175786	Ribonucleases P/MRP protein subunit POP1 isoform X1. (985 aa)
	LOC100181113	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (198 aa)
	F6U609_CIOIN	Nop domain-containing protein. (533 aa)
	F6U2M6_CIOIN	PUA domain-containing protein. (528 aa)
	H2XRD0_CIOIN	POP4 domain-containing protein. (197 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6U2M6_CIOIN	F6U609_CIOIN	ENSCINP00000009502	ENSCINP00000011290	PUA domain-containing protein.	Nop domain-containing protein.	0.996
F6U2M6_CIOIN	H2XP61_CIOIN	ENSCINP00000009502	ENSCINP00000031444	PUA domain-containing protein.	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.994
F6U2M6_CIOIN	H2XRD0_CIOIN	ENSCINP00000009502	ENSCINP00000032214	PUA domain-containing protein.	POP4 domain-containing protein.	0.550
F6U2M6_CIOIN	LOC100175786	ENSCINP00000009502	ENSCINP00000016981	PUA domain-containing protein.	Ribonucleases P/MRP protein subunit POP1 isoform X1.	0.540
F6U2M6_CIOIN	LOC100178209	ENSCINP00000009502	ENSCINP00000034401	PUA domain-containing protein.	Nop domain-containing protein.	0.997
F6U2M6_CIOIN	LOC100180728	ENSCINP00000009502	ENSCINP00000010082	PUA domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.545
F6U2M6_CIOIN	LOC100181113	ENSCINP00000009502	ENSCINP00000011858	PUA domain-containing protein.	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.999
F6U2M6_CIOIN	LOC100181225	ENSCINP00000009502	ENSCINP00000032539	PUA domain-containing protein.	U6 snRNA-associated Sm-like protein LSm6.	0.554
F6U2M6_CIOIN	LOC100182620	ENSCINP00000009502	ENSCINP00000036504	PUA domain-containing protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.986
F6U2M6_CIOIN	LOC100186181	ENSCINP00000009502	ENSCINP00000010410	PUA domain-containing protein.	rRNA 2'-O-methyltransferase fibrillarin.	0.999
F6U609_CIOIN	F6U2M6_CIOIN	ENSCINP00000011290	ENSCINP00000009502	Nop domain-containing protein.	PUA domain-containing protein.	0.996
F6U609_CIOIN	H2XP61_CIOIN	ENSCINP00000011290	ENSCINP00000031444	Nop domain-containing protein.	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.653
F6U609_CIOIN	H2XRD0_CIOIN	ENSCINP00000011290	ENSCINP00000032214	Nop domain-containing protein.	POP4 domain-containing protein.	0.540
F6U609_CIOIN	LOC100175786	ENSCINP00000011290	ENSCINP00000016981	Nop domain-containing protein.	Ribonucleases P/MRP protein subunit POP1 isoform X1.	0.540
F6U609_CIOIN	LOC100178209	ENSCINP00000011290	ENSCINP00000034401	Nop domain-containing protein.	Nop domain-containing protein.	0.999
F6U609_CIOIN	LOC100180728	ENSCINP00000011290	ENSCINP00000010082	Nop domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
F6U609_CIOIN	LOC100181113	ENSCINP00000011290	ENSCINP00000011858	Nop domain-containing protein.	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.976
F6U609_CIOIN	LOC100181225	ENSCINP00000011290	ENSCINP00000032539	Nop domain-containing protein.	U6 snRNA-associated Sm-like protein LSm6.	0.714
F6U609_CIOIN	LOC100182620	ENSCINP00000011290	ENSCINP00000036504	Nop domain-containing protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.999
F6U609_CIOIN	LOC100186181	ENSCINP00000011290	ENSCINP00000010410	Nop domain-containing protein.	rRNA 2'-O-methyltransferase fibrillarin.	0.999