(8 nodes) Aggresome network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2XS19_CIOIN	Uncharacterized protein. (132 aa)
	LOC104265872	TPR_REGION domain-containing protein. (325 aa)
	F6ZAH0_CIOIN	Uncharacterized protein. (382 aa)
	LOC100184598	Sequestosome-1 isoform X1. (329 aa)
	H2XX78_CIOIN	Uncharacterized protein. (377 aa)
	LOC100175581	Uncharacterized protein LOC100175581. (186 aa)
	F6YHW4_CIOIN	Uncharacterized protein. (435 aa)
	F6W9U8_CIOIN	PB1 domain-containing protein. (224 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6W9U8_CIOIN	LOC100184598	ENSCINP00000002565	ENSCINP00000023991	PB1 domain-containing protein.	Sequestosome-1 isoform X1.	0.909
F6YHW4_CIOIN	H2XS19_CIOIN	ENSCINP00000022725	ENSCINP00000032453	Uncharacterized protein.	Uncharacterized protein.	0.428
F6YHW4_CIOIN	LOC104265872	ENSCINP00000022725	ENSCINP00000030115	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.928
H2XS19_CIOIN	F6YHW4_CIOIN	ENSCINP00000032453	ENSCINP00000022725	Uncharacterized protein.	Uncharacterized protein.	0.428
LOC100184598	F6W9U8_CIOIN	ENSCINP00000023991	ENSCINP00000002565	Sequestosome-1 isoform X1.	PB1 domain-containing protein.	0.909
LOC104265872	F6YHW4_CIOIN	ENSCINP00000030115	ENSCINP00000022725	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.928